Analysis of interatomic Contacts of Structural Units in PDB entry:
1UIJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1UIJ entry

There are 6 chains in PDB entry 1UIJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 4	ALA 392
B	ARG 4	ALA 392
C	ASP 6	ALA 392
D	ARG 4	ALA 392
E	ARG 4	ALA 392
F	ASP 6	ALA 392

There are 70 helices in PDB entry 1UIJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	14	17	Right-handed 310
Helix 2	2	A	35	40	Right-handed alpha
Helix 3	3	A	41	47	Right-handed 310
Helix 4	4	A	148	153	Right-handed 310
Helix 5	5	A	154	163	Right-handed alpha
Helix 6	6	A	165	174	Right-handed alpha
Helix 7	7	A	178	182	Right-handed 310
Helix 8	8	A	191	199	Right-handed alpha
Helix 9	9	A	206	212	Right-handed 310
Helix 10	10	A	241	248	Right-handed alpha
Helix 11	11	A	357	361	Right-handed 310
Helix 12	12	A	362	370	Right-handed alpha
Helix 13	13	A	373	381	Right-handed alpha
Helix 14	14	B	14	18	Right-handed alpha
Helix 15	15	B	35	40	Right-handed alpha
Helix 16	16	B	41	47	Right-handed 310
Helix 17	17	B	148	153	Right-handed 310
Helix 18	18	B	154	163	Right-handed alpha
Helix 19	19	B	165	173	Right-handed alpha
Helix 20	20	B	191	200	Right-handed alpha
Helix 21	21	B	220	222	Right-handed 310
Helix 22	22	B	241	248	Right-handed alpha
Helix 23	23	B	356	361	Right-handed 310
Helix 24	24	B	362	370	Right-handed alpha
Helix 25	25	B	373	383	Right-handed alpha
Helix 26	26	C	35	40	Right-handed alpha
Helix 27	27	C	41	47	Right-handed 310
Helix 28	28	C	148	153	Right-handed 310
Helix 29	29	C	154	163	Right-handed alpha
Helix 30	30	C	165	173	Right-handed alpha
Helix 31	31	C	197	199	Right-handed 310
Helix 32	32	C	218	225	Right-handed alpha
Helix 33	33	C	356	361	Right-handed 310
Helix 34	34	C	362	370	Right-handed alpha
Helix 35	35	C	373	382	Right-handed alpha
Helix 36	36	D	14	18	Right-handed alpha
Helix 37	37	D	35	40	Right-handed alpha
Helix 38	38	D	41	47	Right-handed 310
Helix 39	39	D	148	153	Right-handed 310
Helix 40	40	D	154	163	Right-handed alpha
Helix 41	41	D	165	174	Right-handed alpha
Helix 42	42	D	178	182	Right-handed 310
Helix 43	43	D	191	200	Right-handed alpha
Helix 44	44	D	206	212	Right-handed 310
Helix 45	45	D	241	248	Right-handed alpha
Helix 46	46	D	357	361	Right-handed 310
Helix 47	47	D	362	370	Right-handed alpha
Helix 48	48	D	373	382	Right-handed alpha
Helix 49	49	E	14	18	Right-handed alpha
Helix 50	50	E	35	40	Right-handed alpha
Helix 51	51	E	41	47	Right-handed 310
Helix 52	52	E	148	153	Right-handed 310
Helix 53	53	E	154	162	Right-handed alpha
Helix 54	54	E	165	173	Right-handed alpha
Helix 55	55	E	191	200	Right-handed alpha
Helix 56	56	E	206	210	Right-handed 310
Helix 57	57	E	220	222	Right-handed 310
Helix 58	58	E	241	248	Right-handed alpha
Helix 59	59	E	356	361	Right-handed 310
Helix 60	60	E	362	370	Right-handed alpha
Helix 61	61	E	373	383	Right-handed alpha
Helix 62	62	F	35	40	Right-handed alpha
Helix 63	63	F	41	47	Right-handed 310
Helix 64	64	F	148	153	Right-handed 310
Helix 65	65	F	154	163	Right-handed alpha
Helix 66	66	F	165	174	Right-handed alpha
Helix 67	67	F	218	225	Right-handed alpha
Helix 68	68	F	357	361	Right-handed 310
Helix 69	69	F	362	370	Right-handed alpha
Helix 70	70	F	373	381	Right-handed alpha

There are 22 sheets in PDB entry 1UIJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	316	319	anti-parallel
Strand 3	A	271	278	anti-parallel
Strand 4	A	333	340	anti-parallel
Strand 5	A	249	256	anti-parallel
Strand 6	A	231	236	anti-parallel
Strand 7	A	226	227	anti-parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	24	first strand
Strand 2	A	28	33	anti-parallel
Strand 3	A	50	56	anti-parallel
Strand 4	A	120	128	anti-parallel
Strand 5	A	69	77	anti-parallel
Strand 6	A	99	103	anti-parallel
Strand 7	A	217	218	anti-parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	95	first strand
Strand 2	A	80	85	anti-parallel
Strand 3	A	108	113	anti-parallel
Strand 4	A	60	67	anti-parallel
Strand 5	A	187	189	anti-parallel
Strand 6	A	60	67	anti-parallel
Strand 7	A	137	139	anti-parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	312	first strand
Strand 2	A	280	288	anti-parallel
Strand 3	A	325	329	anti-parallel
Strand 4	A	260	267	anti-parallel
Strand 5	A	389	391	anti-parallel
Strand 6	A	260	267	anti-parallel
Strand 7	A	347	349	anti-parallel

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There are 15 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	316	319	anti-parallel
Strand 3	B	271	288	anti-parallel
Strand 4	B	304	311	anti-parallel
Strand 5	B	271	288	anti-parallel
Strand 6	B	325	340	anti-parallel
Strand 7	B	260	267	anti-parallel
Strand 8	B	389	391	anti-parallel
Strand 9	B	260	267	anti-parallel
Strand 10	B	347	349	anti-parallel
Strand 11	B	260	267	anti-parallel
Strand 12	B	325	340	anti-parallel
Strand 13	B	249	256	anti-parallel
Strand 14	B	231	236	anti-parallel
Strand 15	B	226	228	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	24	first strand
Strand 2	B	28	33	anti-parallel
Strand 3	B	50	56	anti-parallel
Strand 4	B	120	128	anti-parallel
Strand 5	B	69	77	anti-parallel
Strand 6	B	99	103	anti-parallel
Strand 7	B	217	218	anti-parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	139	first strand
Strand 2	B	60	67	anti-parallel
Strand 3	B	187	189	anti-parallel
Strand 4	B	60	67	anti-parallel
Strand 5	B	108	113	anti-parallel
Strand 6	B	80	85	anti-parallel
Strand 7	B	90	95	anti-parallel
Strand 8	B	203	204	parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	13	first strand
Strand 2	C	316	319	anti-parallel
Strand 3	C	248	255	anti-parallel
Strand 4	C	333	340	anti-parallel
Strand 5	C	226	233	anti-parallel
Strand 6	C	208	213	anti-parallel
Strand 7	C	203	204	anti-parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	25	first strand
Strand 2	C	28	32	anti-parallel
Strand 3	C	50	56	anti-parallel
Strand 4	C	120	128	anti-parallel
Strand 5	C	69	77	anti-parallel
Strand 6	C	99	103	anti-parallel
Strand 7	C	194	195	anti-parallel

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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	95	first strand
Strand 2	C	80	85	anti-parallel
Strand 3	C	108	112	anti-parallel
Strand 4	C	61	67	anti-parallel
Strand 5	C	187	188	anti-parallel
Strand 6	C	61	67	anti-parallel
Strand 7	C	137	139	anti-parallel

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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	311	first strand
Strand 2	C	258	266	anti-parallel
Strand 3	C	325	329	anti-parallel
Strand 4	C	238	244	anti-parallel
Strand 5	C	389	390	anti-parallel
Strand 6	C	238	244	anti-parallel
Strand 7	C	347	349	anti-parallel

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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	13	first strand
Strand 2	D	316	319	anti-parallel
Strand 3	D	271	278	anti-parallel
Strand 4	D	333	340	anti-parallel
Strand 5	D	249	256	anti-parallel
Strand 6	D	231	236	anti-parallel
Strand 7	D	226	228	anti-parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	24	first strand
Strand 2	D	28	33	anti-parallel
Strand 3	D	50	56	anti-parallel
Strand 4	D	120	128	anti-parallel
Strand 5	D	69	77	anti-parallel
Strand 6	D	99	103	anti-parallel
Strand 7	D	217	218	anti-parallel

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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	95	first strand
Strand 2	D	80	85	anti-parallel
Strand 3	D	108	113	anti-parallel
Strand 4	D	60	67	anti-parallel
Strand 5	D	187	189	anti-parallel
Strand 6	D	60	67	anti-parallel
Strand 7	D	137	139	anti-parallel

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There are 7 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	312	first strand
Strand 2	D	280	288	anti-parallel
Strand 3	D	325	329	anti-parallel
Strand 4	D	260	267	anti-parallel
Strand 5	D	389	391	anti-parallel
Strand 6	D	260	267	anti-parallel
Strand 7	D	347	349	anti-parallel

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There are 15 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	13	first strand
Strand 2	E	316	319	anti-parallel
Strand 3	E	271	288	anti-parallel
Strand 4	E	304	311	anti-parallel
Strand 5	E	271	288	anti-parallel
Strand 6	E	325	340	anti-parallel
Strand 7	E	260	267	anti-parallel
Strand 8	E	389	391	anti-parallel
Strand 9	E	260	267	anti-parallel
Strand 10	E	347	349	anti-parallel
Strand 11	E	260	267	anti-parallel
Strand 12	E	325	340	anti-parallel
Strand 13	E	249	256	anti-parallel
Strand 14	E	231	236	anti-parallel
Strand 15	E	226	228	anti-parallel

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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	25	first strand
Strand 2	E	28	33	anti-parallel
Strand 3	E	50	56	anti-parallel
Strand 4	E	120	128	anti-parallel
Strand 5	E	69	77	anti-parallel
Strand 6	E	99	103	anti-parallel
Strand 7	E	217	218	anti-parallel

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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	139	first strand
Strand 2	E	60	67	anti-parallel
Strand 3	E	187	189	anti-parallel
Strand 4	E	60	67	anti-parallel
Strand 5	E	108	113	anti-parallel
Strand 6	E	80	86	anti-parallel
Strand 7	E	89	95	anti-parallel
Strand 8	E	203	204	parallel

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There are 7 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	13	first strand
Strand 2	F	316	319	anti-parallel
Strand 3	F	248	255	anti-parallel
Strand 4	F	333	340	anti-parallel
Strand 5	F	226	233	anti-parallel
Strand 6	F	208	213	anti-parallel
Strand 7	F	203	205	anti-parallel

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There are 7 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	24	first strand
Strand 2	F	28	33	anti-parallel
Strand 3	F	50	56	anti-parallel
Strand 4	F	120	128	anti-parallel
Strand 5	F	69	77	anti-parallel
Strand 6	F	99	103	anti-parallel
Strand 7	F	194	195	anti-parallel

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There are 7 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	90	95	first strand
Strand 2	F	80	85	anti-parallel
Strand 3	F	108	113	anti-parallel
Strand 4	F	60	67	anti-parallel
Strand 5	F	187	188	anti-parallel
Strand 6	F	60	67	anti-parallel
Strand 7	F	137	139	anti-parallel

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There are 7 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	304	311	first strand
Strand 2	F	258	265	anti-parallel
Strand 3	F	325	329	anti-parallel
Strand 4	F	237	244	anti-parallel
Strand 5	F	389	391	anti-parallel
Strand 6	F	237	244	anti-parallel
Strand 7	F	347	349	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1UIJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
1UIJ