Analysis of interatomic Contacts of Structural Units in PDB entry:
1UJ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UJ5 entry

There is 1 chain in PDB entry 1UJ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3PRO 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1UJ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 18Right-handed alpha
Helix 2
2
A
31 47Right-handed alpha
Helix 3
3
A
59 69Right-handed alpha
Helix 4
4
A
93 95Right-handed 310
Helix 5
5
A
104 114Right-handed alpha
Helix 6
6
A
125 127Right-handed 310
Helix 7
7
A
144 155Right-handed alpha
Helix 8
8
A
187 197Right-handed alpha
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There are 4 sheets in PDB entry 1UJ5. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 57first strand
Strand 2
A
25 28parallel
Strand 3
A
81 86parallel
Strand 4
A
115 123parallel
Strand 5
A
213 218parallel
Strand 6
A
221 225anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
96 98anti-parallel
Strand 3
A
206 207anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 161first strand
Strand 2
A
176 180anti-parallel
Strand 3
A
136 140anti-parallel
Strand 4
A
201 204anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 164first strand
Strand 2
A
167 168anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il