Analysis of interatomic Contacts of Structural Units in PDB entry:
1UJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UJM entry

There are 2 chains in PDB entry 1UJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ALA 343
B
 ALA 2ALA 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1UJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 35Right-handed alpha
Helix 2
2
A
46 48Right-handed 310
Helix 3
3
A
49 60Right-handed alpha
Helix 4
4
A
100 122Right-handed alpha
Helix 5
5
A
133 137Right-handed 310
Helix 6
6
A
155 165Right-handed alpha
Helix 7
7
A
171 196Right-handed alpha
Helix 8
8
A
215 220Right-handed alpha
Helix 9
9
A
222 232Right-handed alpha
Helix 10
10
A
236 241Right-handed alpha
Helix 11
11
A
250 263Right-handed alpha
Helix 12
12
A
279 291Right-handed alpha
Helix 13
13
A
312 322Right-handed alpha
Helix 14
14
A
329 339Right-handed alpha
Helix 15
15
B
22 35Right-handed alpha
Helix 16
16
B
46 48Right-handed 310
Helix 17
17
B
49 60Right-handed alpha
Helix 18
18
B
100 121Right-handed alpha
Helix 19
19
B
133 137Right-handed 310
Helix 20
20
B
155 165Right-handed alpha
Helix 21
21
B
171 196Right-handed alpha
Helix 22
22
B
215 220Right-handed alpha
Helix 23
23
B
222 232Right-handed alpha
Helix 24
24
B
236 241Right-handed alpha
Helix 25
25
B
250 263Right-handed alpha
Helix 26
26
B
279 291Right-handed alpha
Helix 27
27
B
312 322Right-handed alpha
Helix 28
28
B
329 339Right-handed alpha
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There are 6 sheets in PDB entry 1UJM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 68first strand
Strand 2
A
38 43parallel
Strand 3
A
14 18parallel
Strand 4
A
87 90parallel
Strand 5
A
127 131parallel
Strand 6
A
200 206parallel
Strand 7
A
270 273parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
309 310parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 210first strand
Strand 2
A
245 249parallel
Strand 3
A
276 278anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 68first strand
Strand 2
B
38 43parallel
Strand 3
B
14 18parallel
Strand 4
B
87 90parallel
Strand 5
B
127 131parallel
Strand 6
B
200 206parallel
Strand 7
B
270 273parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 149first strand
Strand 2
B
309 310parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 210first strand
Strand 2
B
245 249parallel
Strand 3
B
276 278anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il