Analysis of interatomic Contacts of Structural Units in PDB entry:
1UKP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UKP entry

There are 4 chains in PDB entry 1UKP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 6GLY 495
B
 ASN 6GLY 495
C
 ASN 6GLY 495
D
 ASN 6GLY 495
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 98 helices in PDB entry 1UKP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 11Right-handed 310
Helix 2
2
A
31 45Right-handed alpha
Helix 3
3
A
56 60Right-handed alpha
Helix 4
4
A
69 82Right-handed alpha
Helix 5
5
A
108 118Right-handed alpha
Helix 6
6
A
137 140Right-handed 310
Helix 7
7
A
149 165Right-handed alpha
Helix 8
8
A
165 171Right-handed alpha
Helix 9
9
A
182 186Right-handed 310
Helix 10
10
A
193 197Right-handed 310
Helix 11
11
A
210 224Right-handed alpha
Helix 12
12
A
241 245Right-handed 310
Helix 13
13
A
252 255Right-handed 310
Helix 14
14
A
256 286Right-handed alpha
Helix 15
15
A
308 315Right-handed alpha
Helix 16
16
A
325 334Right-handed alpha
Helix 17
17
A
347 351Right-handed 310
Helix 18
18
A
352 356Right-handed 310
Helix 19
19
A
358 373Right-handed alpha
Helix 20
20
A
387 399Right-handed alpha
Helix 21
21
A
427 442Right-handed alpha
Helix 22
22
A
450 455Right-handed 310
Helix 23
23
A
469 474Right-handed alpha
Helix 24
24
A
475 478Right-handed 310
Helix 25
25
B
6 11Right-handed 310
Helix 26
26
B
31 45Right-handed alpha
Helix 27
27
B
56 60Right-handed alpha
Helix 28
28
B
69 82Right-handed alpha
Helix 29
29
B
108 118Right-handed alpha
Helix 30
30
B
137 140Right-handed 310
Helix 31
31
B
149 165Right-handed alpha
Helix 32
32
B
165 171Right-handed alpha
Helix 33
33
B
182 186Right-handed 310
Helix 34
34
B
193 197Right-handed 310
Helix 35
35
B
210 224Right-handed alpha
Helix 36
36
B
241 245Right-handed 310
Helix 37
37
B
252 255Right-handed 310
Helix 38
38
B
256 286Right-handed alpha
Helix 39
39
B
308 315Right-handed alpha
Helix 40
40
B
325 334Right-handed alpha
Helix 41
41
B
347 351Right-handed 310
Helix 42
42
B
352 356Right-handed 310
Helix 43
43
B
358 373Right-handed alpha
Helix 44
44
B
387 399Right-handed alpha
Helix 45
45
B
422 427Right-handed alpha
Helix 46
46
B
427 442Right-handed alpha
Helix 47
47
B
450 455Right-handed 310
Helix 48
48
B
469 474Right-handed alpha
Helix 49
49
B
475 478Right-handed 310
Helix 50
50
C
6 11Right-handed 310
Helix 51
51
C
31 45Right-handed alpha
Helix 52
52
C
56 60Right-handed alpha
Helix 53
53
C
69 82Right-handed alpha
Helix 54
54
C
108 118Right-handed alpha
Helix 55
55
C
137 140Right-handed 310
Helix 56
56
C
149 165Right-handed alpha
Helix 57
57
C
165 171Right-handed alpha
Helix 58
58
C
182 186Right-handed 310
Helix 59
59
C
193 197Right-handed 310
Helix 60
60
C
210 224Right-handed alpha
Helix 61
61
C
241 245Right-handed 310
Helix 62
62
C
252 255Right-handed 310
Helix 63
63
C
256 285Right-handed alpha
Helix 64
64
C
308 315Right-handed alpha
Helix 65
65
C
325 334Right-handed alpha
Helix 66
66
C
347 351Right-handed 310
Helix 67
67
C
352 356Right-handed 310
Helix 68
68
C
358 373Right-handed alpha
Helix 69
69
C
387 399Right-handed alpha
Helix 70
70
C
422 427Right-handed alpha
Helix 71
71
C
427 442Right-handed alpha
Helix 72
72
C
450 455Right-handed 310
Helix 73
73
C
469 475Right-handed alpha
Helix 74
74
C
476 478Right-handed 310
Helix 75
75
D
6 11Right-handed 310
Helix 76
76
D
31 45Right-handed alpha
Helix 77
77
D
56 60Right-handed alpha
Helix 78
78
D
69 82Right-handed alpha
Helix 79
79
D
108 118Right-handed alpha
Helix 80
80
D
137 140Right-handed 310
Helix 81
81
D
149 165Right-handed alpha
Helix 82
82
D
165 171Right-handed alpha
Helix 83
83
D
182 186Right-handed 310
Helix 84
84
D
193 197Right-handed 310
Helix 85
85
D
210 224Right-handed alpha
Helix 86
86
D
241 245Right-handed 310
Helix 87
87
D
252 255Right-handed 310
Helix 88
88
D
256 285Right-handed alpha
Helix 89
89
D
308 315Right-handed alpha
Helix 90
90
D
325 334Right-handed alpha
Helix 91
91
D
347 351Right-handed 310
Helix 92
92
D
352 356Right-handed 310
Helix 93
93
D
358 373Right-handed alpha
Helix 94
94
D
387 399Right-handed alpha
Helix 95
95
D
427 442Right-handed alpha
Helix 96
96
D
450 455Right-handed 310
Helix 97
97
D
469 474Right-handed alpha
Helix 98
98
D
475 478Right-handed 310
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There are 8 sheets in PDB entry 1UKP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
49 55parallel
Strand 3
A
85 91parallel
Strand 4
A
174 179parallel
Strand 5
A
291 295parallel
Strand 6
A
338 341parallel
Strand 7
A
377 380parallel
Strand 8
A
416 418parallel
Strand 9
A
14 17parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 124first strand
Strand 2
A
130 135anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 17first strand
Strand 2
B
49 55parallel
Strand 3
B
85 91parallel
Strand 4
B
174 179parallel
Strand 5
B
291 295parallel
Strand 6
B
338 341parallel
Strand 7
B
377 380parallel
Strand 8
B
415 418parallel
Strand 9
B
14 17parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 124first strand
Strand 2
B
130 135anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 17first strand
Strand 2
C
49 55parallel
Strand 3
C
85 91parallel
Strand 4
C
174 179parallel
Strand 5
C
291 295parallel
Strand 6
C
338 341parallel
Strand 7
C
377 380parallel
Strand 8
C
416 418parallel
Strand 9
C
14 17parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
122 124first strand
Strand 2
C
130 135anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
14 17first strand
Strand 2
D
49 55parallel
Strand 3
D
85 91parallel
Strand 4
D
174 179parallel
Strand 5
D
291 295parallel
Strand 6
D
338 341parallel
Strand 7
D
377 380parallel
Strand 8
D
415 418parallel
Strand 9
D
14 17parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
122 124first strand
Strand 2
D
130 135anti-parallel
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