Analysis of interatomic Contacts of Structural Units in PDB entry:
1UM0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UM0 entry

There are 4 chains in PDB entry 1UM0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 365
B
 MET 1ASN 365
C
 MET 1ASN 365
D
 MET 1ASN 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 1UM0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 47Right-handed alpha
Helix 2
2
A
55 60Right-handed alpha
Helix 3
3
A
105 114Right-handed alpha
Helix 4
4
A
125 146Right-handed alpha
Helix 5
5
A
166 173Right-handed alpha
Helix 6
6
A
179 196Right-handed alpha
Helix 7
7
A
228 239Right-handed alpha
Helix 8
8
A
250 257Right-handed 310
Helix 9
9
A
258 263Right-handed alpha
Helix 10
10
A
327 350Right-handed alpha
Helix 11
11
A
351 353Right-handed 310
Helix 12
12
A
354 363Right-handed alpha
Helix 13
13
B
35 47Right-handed alpha
Helix 14
14
B
55 60Right-handed alpha
Helix 15
15
B
105 114Right-handed alpha
Helix 16
16
B
126 145Right-handed alpha
Helix 17
17
B
166 172Right-handed alpha
Helix 18
18
B
179 196Right-handed alpha
Helix 19
19
B
228 239Right-handed alpha
Helix 20
20
B
250 257Right-handed 310
Helix 21
21
B
327 350Right-handed alpha
Helix 22
22
B
351 353Right-handed 310
Helix 23
23
B
354 363Right-handed alpha
Helix 24
24
C
35 48Right-handed alpha
Helix 25
25
C
105 114Right-handed alpha
Helix 26
26
C
125 146Right-handed alpha
Helix 27
27
C
166 172Right-handed alpha
Helix 28
28
C
179 196Right-handed alpha
Helix 29
29
C
228 239Right-handed alpha
Helix 30
30
C
250 257Right-handed 310
Helix 31
31
C
258 263Right-handed alpha
Helix 32
32
C
327 350Right-handed alpha
Helix 33
33
C
351 353Right-handed 310
Helix 34
34
C
354 364Right-handed alpha
Helix 35
35
D
35 46Right-handed alpha
Helix 36
36
D
105 114Right-handed alpha
Helix 37
37
D
125 145Right-handed alpha
Helix 38
38
D
166 173Right-handed alpha
Helix 39
39
D
179 196Right-handed alpha
Helix 40
40
D
228 239Right-handed alpha
Helix 41
41
D
250 257Right-handed 310
Helix 42
42
D
258 263Right-handed alpha
Helix 43
43
D
327 350Right-handed alpha
Helix 44
44
D
351 353Right-handed 310
Helix 45
45
D
354 363Right-handed alpha
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There are 20 sheets in PDB entry 1UM0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
9 12anti-parallel
Strand 3
A
20 26anti-parallel
Strand 4
A
79 84anti-parallel
Strand 5
A
62 65anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
73 74anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
148 157anti-parallel
Strand 3
A
202 210anti-parallel
Strand 4
A
289 295anti-parallel
Strand 5
A
243 248anti-parallel
Strand 6
D
243 248anti-parallel
Strand 7
D
289 295anti-parallel
Strand 8
D
202 210anti-parallel
Strand 9
D
148 157anti-parallel
Strand 10
D
160 161anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
270 271anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 280first strand
Strand 2
A
283 284anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 308first strand
Strand 2
A
314 317anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
9 12anti-parallel
Strand 3
B
20 26anti-parallel
Strand 4
B
79 84anti-parallel
Strand 5
B
62 65anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 70first strand
Strand 2
B
73 74anti-parallel
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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 161first strand
Strand 2
B
148 157anti-parallel
Strand 3
B
202 210anti-parallel
Strand 4
B
289 295anti-parallel
Strand 5
B
243 248anti-parallel
Strand 6
C
243 248anti-parallel
Strand 7
C
289 295anti-parallel
Strand 8
C
202 210anti-parallel
Strand 9
C
148 157anti-parallel
Strand 10
C
160 161anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
279 280first strand
Strand 2
B
283 284anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
304 308first strand
Strand 2
B
314 318anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 4first strand
Strand 2
C
9 12anti-parallel
Strand 3
C
20 26anti-parallel
Strand 4
C
79 84anti-parallel
Strand 5
C
62 65anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 70first strand
Strand 2
C
73 74anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
99 100first strand
Strand 2
C
308 309anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
279 280first strand
Strand 2
C
283 284anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 4first strand
Strand 2
D
9 12anti-parallel
Strand 3
D
20 26anti-parallel
Strand 4
D
79 84anti-parallel
Strand 5
D
63 65anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
69 70first strand
Strand 2
D
73 74anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
266 267first strand
Strand 2
D
270 271anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
279 280first strand
Strand 2
D
283 284anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
304 308first strand
Strand 2
D
314 318anti-parallel
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