Analysis of interatomic Contacts of Structural Units in PDB entry:
1UM2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1UM2 entry

There are 4 chains in PDB entry 1UM2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 284	ASN 737
B	SER 284	ASN 737
C	TYR 281	ARG 741
D	TYR 281	ARG 741

There are 24 helices in PDB entry 1UM2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	414	418	Right-handed 310
Helix 2	2	A	419	433	Right-handed alpha
Helix 3	3	A	445	450	Right-handed 310
Helix 4	4	A	451	457	Right-handed alpha
Helix 5	5	A	470	477	Right-handed alpha
Helix 6	6	A	486	500	Right-handed alpha
Helix 7	7	A	517	530	Right-handed alpha
Helix 8	8	A	567	576	Right-handed alpha
Helix 9	9	A	587	591	Right-handed 310
Helix 10	10	A	594	610	Right-handed alpha
Helix 11	11	A	626	640	Right-handed alpha
Helix 12	12	A	671	679	Right-handed alpha
Helix 13	13	B	414	419	Right-handed 310
Helix 14	14	B	420	425	Right-handed alpha
Helix 15	15	B	425	431	Right-handed alpha
Helix 16	16	B	451	458	Right-handed alpha
Helix 17	17	B	470	476	Right-handed alpha
Helix 18	18	B	486	502	Right-handed alpha
Helix 19	19	B	515	527	Right-handed alpha
Helix 20	20	B	567	576	Right-handed alpha
Helix 21	21	B	587	593	Right-handed 310
Helix 22	22	B	594	609	Right-handed alpha
Helix 23	23	B	626	640	Right-handed alpha
Helix 24	24	B	671	679	Right-handed alpha

There are 18 sheets in PDB entry 1UM2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	311	first strand
Strand 2	A	317	319	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	359	first strand
Strand 2	A	325	335	anti-parallel
Strand 3	A	704	715	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	369	first strand
Strand 2	A	437	443	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	374	first strand
Strand 2	A	387	396	anti-parallel
Strand 3	A	402	411	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	378	first strand
Strand 2	A	383	384	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	460	462	first strand
Strand 2	A	700	702	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	611	613	first strand
Strand 2	A	619	624	anti-parallel
Strand 3	A	663	669	anti-parallel
Strand 4	A	643	649	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	726	728	first strand
Strand 2	A	734	736	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	292	first strand
Strand 2	B	298	300	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	311	first strand
Strand 2	B	317	319	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	328	first strand
Strand 2	B	712	715	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	359	first strand
Strand 2	B	330	335	anti-parallel
Strand 3	B	704	708	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	443	first strand
Strand 2	B	363	369	anti-parallel
Strand 3	B	459	462	anti-parallel
Strand 4	B	700	702	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	379	first strand
Strand 2	B	382	392	anti-parallel
Strand 3	B	406	409	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	509	512	first strand
Strand 2	B	544	547	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	579	580	first strand
Strand 2	B	583	584	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	610	613	first strand
Strand 2	B	619	624	anti-parallel
Strand 3	B	663	669	anti-parallel
Strand 4	B	643	649	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	726	728	first strand
Strand 2	B	734	736	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1UM2

Analysis of interatomic Contacts of Structural Units in PDB entry:
1UM2