Analysis of interatomic Contacts of Structural Units in PDB entry:
1UM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UM8 entry

There is 1 chain in PDB entry 1UM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 75ALA 438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1UM8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
81 91Right-handed alpha
Helix 2
2
A
96 124Right-handed alpha
Helix 3
3
A
125 138Right-handed alpha
Helix 4
4
A
154 166Right-handed alpha
Helix 5
5
A
176 178Right-handed 310
Helix 6
6
A
189 199Right-handed alpha
Helix 7
7
A
202 207Right-handed alpha
Helix 8
8
A
216 219Right-handed 310
Helix 9
9
A
234 247Right-handed alpha
Helix 10
10
A
283 288Right-handed alpha
Helix 11
11
A
312 316Right-handed 310
Helix 12
12
A
317 324Right-handed alpha
Helix 13
13
A
327 332Right-handed alpha
Helix 14
14
A
344 354Right-handed alpha
Helix 15
15
A
358 369Right-handed alpha
Helix 16
16
A
377 391Right-handed alpha
Helix 17
17
A
394 396Right-handed 310
Helix 18
18
A
397 412Right-handed alpha
Helix 19
19
A
413 417Right-handed 310
Helix 20
20
A
424 429Right-handed alpha
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There are 3 sheets in PDB entry 1UM8. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 174first strand
Strand 2
A
210 214parallel
Strand 3
A
274 279parallel
Strand 4
A
145 148parallel
Strand 5
A
336 339parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 250first strand
Strand 2
A
268 269anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 376first strand
Strand 2
A
420 423parallel
Strand 3
A
435 437anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il