Analysis of interatomic Contacts of Structural Units in PDB entry:
1UMR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UMR entry

There are 4 chains in PDB entry 1UMR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1CYS 135
B
 GLY 1CYS 135
C
 GLY 201ALA 325
D
 GLY 201ALA 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1UMR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 36Right-handed alpha
Helix 2
2
A
46 61Right-handed alpha
Helix 3
3
A
97 101Right-handed 310
Helix 4
4
A
110 112Right-handed 310
Helix 5
5
B
24 36Right-handed alpha
Helix 6
6
B
46 61Right-handed alpha
Helix 7
7
B
97 101Right-handed 310
Helix 8
8
B
110 112Right-handed 310
Helix 9
9
C
224 236Right-handed alpha
Helix 10
10
C
246 259Right-handed alpha
Helix 11
11
D
225 236Right-handed alpha
Helix 12
12
D
246 261Right-handed alpha
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There are 10 sheets in PDB entry 1UMR. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, A, DB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
14 23anti-parallel
Strand 3
A
125 131anti-parallel
Strand 4
A
40 41anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 69first strand
Strand 2
A
104 108anti-parallel
Strand 3
A
117 119anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
C
279 281anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 11first strand
Strand 2
B
14 23anti-parallel
Strand 3
B
125 131anti-parallel
Strand 4
B
40 41anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 69first strand
Strand 2
B
104 108anti-parallel
Strand 3
B
117 119anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 74first strand
Strand 2
D
279 281anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
209 211first strand
Strand 2
C
214 223anti-parallel
Strand 3
C
317 324anti-parallel
Strand 4
C
240 241anti-parallel
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There are 6 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
209 211first strand
Strand 2
C
214 223anti-parallel
Strand 3
C
317 324anti-parallel
Strand 4
C
265 267parallel
Strand 5
C
297 302anti-parallel
Strand 6
C
308 312anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
209 211first strand
Strand 2
D
214 224anti-parallel
Strand 3
D
316 324anti-parallel
Strand 4
D
240 241anti-parallel
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There are 6 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
209 211first strand
Strand 2
D
214 224anti-parallel
Strand 3
D
316 324anti-parallel
Strand 4
D
265 267parallel
Strand 5
D
297 302anti-parallel
Strand 6
D
308 312anti-parallel
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