Analysis of interatomic Contacts of Structural Units in PDB entry:
1UMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UMY entry

There are 4 chains in PDB entry 1UMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 10GLU 399
B
 LYS 10GLU 399
C
 LYS 10ALA 406
D
 LYS 10SER 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 1UMY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 19Right-handed alpha
Helix 2
2
A
28 36Right-handed alpha
Helix 3
3
A
47 52Right-handed alpha
Helix 4
4
A
52 67Right-handed alpha
Helix 5
5
A
95 113Right-handed alpha
Helix 6
6
A
125 130Right-handed alpha
Helix 7
7
A
133 151Right-handed alpha
Helix 8
8
A
163 176Right-handed alpha
Helix 9
9
A
197 208Right-handed alpha
Helix 10
10
A
220 237Right-handed alpha
Helix 11
11
A
260 264Right-handed 310
Helix 12
12
A
271 274Right-handed 310
Helix 13
13
A
277 292Right-handed alpha
Helix 14
14
A
303 314Right-handed alpha
Helix 15
15
A
314 319Right-handed alpha
Helix 16
16
A
322 328Right-handed 310
Helix 17
17
A
332 336Right-handed 310
Helix 18
18
A
340 345Right-handed alpha
Helix 19
19
A
348 355Right-handed alpha
Helix 20
20
A
377 398Right-handed alpha
Helix 21
21
B
12 19Right-handed alpha
Helix 22
22
B
28 36Right-handed alpha
Helix 23
23
B
47 52Right-handed alpha
Helix 24
24
B
52 67Right-handed alpha
Helix 25
25
B
95 113Right-handed alpha
Helix 26
26
B
133 151Right-handed alpha
Helix 27
27
B
163 176Right-handed alpha
Helix 28
28
B
197 208Right-handed alpha
Helix 29
29
B
220 237Right-handed alpha
Helix 30
30
B
260 264Right-handed 310
Helix 31
31
B
271 274Right-handed 310
Helix 32
32
B
277 292Right-handed alpha
Helix 33
33
B
303 314Right-handed alpha
Helix 34
34
B
314 319Right-handed alpha
Helix 35
35
B
322 328Right-handed 310
Helix 36
36
B
332 336Right-handed 310
Helix 37
37
B
340 345Right-handed alpha
Helix 38
38
B
348 355Right-handed alpha
Helix 39
39
B
377 380Right-handed 310
Helix 40
40
B
381 398Right-handed alpha
Helix 41
41
C
12 19Right-handed alpha
Helix 42
42
C
28 36Right-handed alpha
Helix 43
43
C
47 52Right-handed alpha
Helix 44
44
C
52 67Right-handed alpha
Helix 45
45
C
95 113Right-handed alpha
Helix 46
46
C
134 151Right-handed alpha
Helix 47
47
C
163 176Right-handed alpha
Helix 48
48
C
197 208Right-handed alpha
Helix 49
49
C
220 237Right-handed alpha
Helix 50
50
C
260 264Right-handed 310
Helix 51
51
C
271 274Right-handed 310
Helix 52
52
C
277 292Right-handed alpha
Helix 53
53
C
303 314Right-handed alpha
Helix 54
54
C
314 319Right-handed alpha
Helix 55
55
C
322 328Right-handed 310
Helix 56
56
C
332 336Right-handed 310
Helix 57
57
C
340 345Right-handed alpha
Helix 58
58
C
348 355Right-handed alpha
Helix 59
59
C
382 402Right-handed alpha
Helix 60
60
D
12 19Right-handed alpha
Helix 61
61
D
28 36Right-handed alpha
Helix 62
62
D
47 52Right-handed alpha
Helix 63
63
D
52 67Right-handed alpha
Helix 64
64
D
96 113Right-handed alpha
Helix 65
65
D
127 131Right-handed 310
Helix 66
66
D
133 151Right-handed alpha
Helix 67
67
D
163 176Right-handed alpha
Helix 68
68
D
197 208Right-handed alpha
Helix 69
69
D
220 237Right-handed alpha
Helix 70
70
D
260 264Right-handed 310
Helix 71
71
D
271 274Right-handed 310
Helix 72
72
D
277 292Right-handed alpha
Helix 73
73
D
303 314Right-handed alpha
Helix 74
74
D
314 319Right-handed alpha
Helix 75
75
D
322 328Right-handed 310
Helix 76
76
D
332 336Right-handed 310
Helix 77
77
D
340 345Right-handed alpha
Helix 78
78
D
348 355Right-handed alpha
Helix 79
79
D
382 402Right-handed alpha
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There are 4 sheets in PDB entry 1UMY. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
295 296parallel
Strand 3
A
243 247parallel
Strand 4
A
212 216parallel
Strand 5
A
181 185parallel
Strand 6
A
155 158parallel
Strand 7
A
117 122parallel
Strand 8
A
70 72parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 24first strand
Strand 2
B
295 296parallel
Strand 3
B
243 247parallel
Strand 4
B
212 216parallel
Strand 5
B
181 185parallel
Strand 6
B
155 159parallel
Strand 7
B
117 123parallel
Strand 8
B
70 72parallel
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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 24first strand
Strand 2
C
295 296parallel
Strand 3
C
243 247parallel
Strand 4
C
212 216parallel
Strand 5
C
181 184parallel
Strand 6
C
155 158parallel
Strand 7
C
117 122parallel
Strand 8
C
70 72parallel
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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
23 24first strand
Strand 2
D
295 296parallel
Strand 3
D
243 247parallel
Strand 4
D
212 216parallel
Strand 5
D
181 185parallel
Strand 6
D
155 158parallel
Strand 7
D
117 122parallel
Strand 8
D
70 72parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il