Analysis of interatomic Contacts of Structural Units in PDB entry:
1UOD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UOD entry

There are 2 chains in PDB entry 1UOD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 20LYS 368
B
 ASP 20LYS 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1UOD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 33Right-handed alpha
Helix 2
2
A
70 73Right-handed 310
Helix 3
3
A
92 104Right-handed alpha
Helix 4
4
A
116 133Right-handed alpha
Helix 5
5
A
161 177Right-handed alpha
Helix 6
6
A
179 192Right-handed alpha
Helix 7
7
A
242 257Right-handed alpha
Helix 8
8
A
301 320Right-handed alpha
Helix 9
9
A
348 357Right-handed alpha
Helix 10
10
B
20 33Right-handed alpha
Helix 11
11
B
70 73Right-handed 310
Helix 12
12
B
92 104Right-handed alpha
Helix 13
13
B
116 133Right-handed alpha
Helix 14
14
B
161 177Right-handed alpha
Helix 15
15
B
179 192Right-handed alpha
Helix 16
16
B
242 257Right-handed alpha
Helix 17
17
B
301 320Right-handed alpha
Helix 18
18
B
348 357Right-handed alpha
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There are 8 sheets in PDB entry 1UOD. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
44 47anti-parallel
Strand 3
A
81 87anti-parallel
Strand 4
A
57 64parallel
Strand 5
A
109 114parallel
Strand 6
A
137 142parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 239first strand
Strand 2
A
222 225anti-parallel
Strand 3
A
194 202anti-parallel
Strand 4
A
338 347anti-parallel
Strand 5
A
289 296anti-parallel
Strand 6
A
322 329parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 268first strand
Strand 2
A
273 281anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 360first strand
Strand 2
A
365 366anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 39first strand
Strand 2
B
44 47anti-parallel
Strand 3
B
81 87anti-parallel
Strand 4
B
57 64parallel
Strand 5
B
109 114parallel
Strand 6
B
137 142parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 239first strand
Strand 2
B
222 225anti-parallel
Strand 3
B
194 202anti-parallel
Strand 4
B
338 346anti-parallel
Strand 5
B
289 296anti-parallel
Strand 6
B
322 329parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 268first strand
Strand 2
B
273 281anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
359 360first strand
Strand 2
B
365 366anti-parallel
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