Analysis of interatomic Contacts of Structural Units in PDB entry:
1UP3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UP3 entry

There is 1 chain in PDB entry 1UP3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 88GLN 380
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1UP3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
102 111Right-handed alpha
Helix 2
2
A
115 123Right-handed alpha
Helix 3
3
A
135 153Right-handed alpha
Helix 4
4
A
168 171Right-handed 310
Helix 5
5
A
179 195Right-handed alpha
Helix 6
6
A
206 211Right-handed alpha
Helix 7
7
A
212 214Right-handed 310
Helix 8
8
A
215 234Right-handed alpha
Helix 9
9
A
252 263Right-handed alpha
Helix 10
10
A
264 268Right-handed 310
Helix 11
11
A
280 295Right-handed alpha
Helix 12
12
A
367 378Right-handed alpha
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There is 1 sheet ( AA) in PDB entry 1UP3.

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
158 161parallel
Strand 3
A
199 203parallel
Strand 4
A
239 244parallel
Strand 5
A
270 273parallel
Strand 6
A
299 303parallel
Strand 7
A
340 344parallel
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