Analysis of interatomic Contacts of Structural Units in PDB entry:
1UP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UP8 entry

There are 4 chains in PDB entry 1UP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ILE 597
B
 GLY 1ILE 597
C
 GLY 1ILE 597
D
 GLY 1ILE 597
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are108 helices in PDB entry 1UP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 28Right-handed alpha
Helix 2
2
A
37 42Right-handed alpha
Helix 3
3
A
72 86Right-handed alpha
Helix 4
4
A
87 93Right-handed alpha
Helix 5
5
A
111 118Right-handed alpha
Helix 6
6
A
128 132Right-handed 310
Helix 7
7
A
153 169Right-handed alpha
Helix 8
8
A
174 177Right-handed 310
Helix 9
9
A
179 181Right-handed 310
Helix 10
10
A
182 195Right-handed alpha
Helix 11
11
A
196 201Right-handed alpha
Helix 12
12
A
208 215Right-handed alpha
Helix 13
13
A
239 243Right-handed 310
Helix 14
14
A
263 269Right-handed 310
Helix 15
15
A
295 304Right-handed alpha
Helix 16
16
A
323 334Right-handed alpha
Helix 17
17
A
337 350Right-handed alpha
Helix 18
18
A
363 368Right-handed alpha
Helix 19
19
A
376 401Right-handed alpha
Helix 20
20
A
407 424Right-handed alpha
Helix 21
21
A
429 431Right-handed 310
Helix 22
22
A
432 439Right-handed alpha
Helix 23
23
A
439 457Right-handed alpha
Helix 24
24
A
484 501Right-handed alpha
Helix 25
25
A
530 550Right-handed alpha
Helix 26
26
A
553 576Right-handed alpha
Helix 27
27
A
577 579Right-handed 310
Helix 28
28
B
9 27Right-handed alpha
Helix 29
29
B
37 42Right-handed alpha
Helix 30
30
B
72 86Right-handed alpha
Helix 31
31
B
87 93Right-handed alpha
Helix 32
32
B
111 118Right-handed alpha
Helix 33
33
B
128 132Right-handed 310
Helix 34
34
B
153 169Right-handed alpha
Helix 35
35
B
174 177Right-handed 310
Helix 36
36
B
179 181Right-handed 310
Helix 37
37
B
182 195Right-handed alpha
Helix 38
38
B
196 201Right-handed alpha
Helix 39
39
B
208 215Right-handed alpha
Helix 40
40
B
239 243Right-handed 310
Helix 41
41
B
263 269Right-handed 310
Helix 42
42
B
295 304Right-handed alpha
Helix 43
43
B
323 334Right-handed alpha
Helix 44
44
B
337 350Right-handed alpha
Helix 45
45
B
363 368Right-handed alpha
Helix 46
46
B
376 401Right-handed alpha
Helix 47
47
B
407 424Right-handed alpha
Helix 48
48
B
429 431Right-handed 310
Helix 49
49
B
432 439Right-handed alpha
Helix 50
50
B
439 457Right-handed alpha
Helix 51
51
B
484 501Right-handed alpha
Helix 52
52
B
530 550Right-handed alpha
Helix 53
53
B
553 576Right-handed alpha
Helix 54
54
B
577 579Right-handed 310
Helix 55
55
C
9 28Right-handed alpha
Helix 56
56
C
37 42Right-handed alpha
Helix 57
57
C
72 86Right-handed alpha
Helix 58
58
C
87 93Right-handed alpha
Helix 59
59
C
111 117Right-handed alpha
Helix 60
60
C
128 132Right-handed 310
Helix 61
61
C
153 168Right-handed alpha
Helix 62
62
C
174 177Right-handed 310
Helix 63
63
C
179 181Right-handed 310
Helix 64
64
C
182 194Right-handed alpha
Helix 65
65
C
196 201Right-handed alpha
Helix 66
66
C
208 215Right-handed alpha
Helix 67
67
C
239 243Right-handed 310
Helix 68
68
C
263 269Right-handed 310
Helix 69
69
C
295 304Right-handed alpha
Helix 70
70
C
323 334Right-handed alpha
Helix 71
71
C
337 350Right-handed alpha
Helix 72
72
C
363 368Right-handed alpha
Helix 73
73
C
376 401Right-handed alpha
Helix 74
74
C
407 423Right-handed alpha
Helix 75
75
C
429 431Right-handed 310
Helix 76
76
C
432 439Right-handed alpha
Helix 77
77
C
439 457Right-handed alpha
Helix 78
78
C
484 501Right-handed alpha
Helix 79
79
C
530 549Right-handed alpha
Helix 80
80
C
553 576Right-handed alpha
Helix 81
81
C
577 579Right-handed 310
Helix 82
82
D
9 28Right-handed alpha
Helix 83
83
D
37 42Right-handed alpha
Helix 84
84
D
72 86Right-handed alpha
Helix 85
85
D
87 93Right-handed alpha
Helix 86
86
D
111 118Right-handed alpha
Helix 87
87
D
128 132Right-handed 310
Helix 88
88
D
153 169Right-handed alpha
Helix 89
89
D
174 177Right-handed 310
Helix 90
90
D
179 181Right-handed 310
Helix 91
91
D
182 195Right-handed alpha
Helix 92
92
D
196 201Right-handed alpha
Helix 93
93
D
208 215Right-handed alpha
Helix 94
94
D
239 243Right-handed 310
Helix 95
95
D
263 269Right-handed 310
Helix 96
96
D
295 304Right-handed alpha
Helix 97
97
D
323 334Right-handed alpha
Helix 98
98
D
337 350Right-handed alpha
Helix 99
99
D
363 368Right-handed alpha
Helix 100
100
D
376 401Right-handed alpha
Helix 101
101
D
407 424Right-handed alpha
Helix 102
102
D
429 431Right-handed 310
Helix 103
103
D
432 439Right-handed alpha
Helix 104
104
D
439 457Right-handed alpha
Helix 105
105
D
484 501Right-handed alpha
Helix 106
106
D
530 550Right-handed alpha
Helix 107
107
D
553 576Right-handed alpha
Helix 108
108
D
577 579Right-handed 310
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There are 22 sheets in PDB entry 1UP8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, CA, CB, CC, CD, CE, CF, CG, A, DB, C, DD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
B
369 370parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 254first strand
Strand 2
A
257 259anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 274first strand
Strand 2
A
277 280anti-parallel
Strand 3
B
277 280anti-parallel
Strand 4
B
271 274anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 286first strand
Strand 2
A
314 319anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 370first strand
Strand 2
B
124 125parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 513first strand
Strand 2
A
520 522anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
586 588first strand
Strand 2
A
594 596anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 254first strand
Strand 2
B
257 259anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 286first strand
Strand 2
B
314 319anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
511 513first strand
Strand 2
B
520 522anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
586 588first strand
Strand 2
B
594 596anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 125first strand
Strand 2
D
369 370parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
252 254first strand
Strand 2
C
257 259anti-parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
271 274first strand
Strand 2
C
277 280anti-parallel
Strand 3
D
277 280anti-parallel
Strand 4
D
271 274anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
283 286first strand
Strand 2
C
314 319anti-parallel
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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
369 370first strand
Strand 2
D
124 125parallel
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There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
511 513first strand
Strand 2
C
520 522anti-parallel
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There are 2 strands in CG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
586 588first strand
Strand 2
C
594 596anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
252 254first strand
Strand 2
D
257 259anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
283 286first strand
Strand 2
D
314 319anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
511 513first strand
Strand 2
D
520 522anti-parallel
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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
586 588first strand
Strand 2
D
594 596anti-parallel
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