Analysis of interatomic Contacts of Structural Units in PDB entry:
1UPA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UPA entry

There are 4 chains in PDB entry 1UPA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 12SER 572
B
 PRO 12SER 572
C
 PRO 12PHE 563
D
 PRO 12SER 572
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are116 helices in PDB entry 1UPA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 25Right-handed alpha
Helix 2
2
A
35 40Right-handed 310
Helix 3
3
A
56 72Right-handed alpha
Helix 4
4
A
82 99Right-handed alpha
Helix 5
5
A
110 114Right-handed 310
Helix 6
6
A
124 130Right-handed alpha
Helix 7
7
A
131 133Right-handed 310
Helix 8
8
A
141 143Right-handed 310
Helix 9
9
A
144 157Right-handed alpha
Helix 10
10
A
170 174Right-handed alpha
Helix 11
11
A
201 216Right-handed alpha
Helix 12
12
A
224 230Right-handed alpha
Helix 13
13
A
232 244Right-handed alpha
Helix 14
14
A
271 277Right-handed alpha
Helix 15
15
A
297 301Right-handed 310
Helix 16
16
A
303 308Right-handed alpha
Helix 17
17
A
338 350Right-handed alpha
Helix 18
18
A
361 373Right-handed alpha
Helix 19
19
A
383 399Right-handed alpha
Helix 20
20
A
411 421Right-handed alpha
Helix 21
21
A
440 452Right-handed alpha
Helix 22
22
A
463 469Right-handed alpha
Helix 23
23
A
472 480Right-handed alpha
Helix 24
24
A
493 505Right-handed alpha
Helix 25
25
A
508 512Right-handed 310
Helix 26
26
A
518 526Right-handed alpha
Helix 27
27
A
535 548Right-handed alpha
Helix 28
28
A
564 568Right-handed 310
Helix 29
29
A
568 572Right-handed 310
Helix 30
30
B
13 25Right-handed alpha
Helix 31
31
B
35 40Right-handed 310
Helix 32
32
B
56 72Right-handed alpha
Helix 33
33
B
82 99Right-handed alpha
Helix 34
34
B
110 114Right-handed 310
Helix 35
35
B
124 130Right-handed alpha
Helix 36
36
B
131 133Right-handed 310
Helix 37
37
B
141 143Right-handed 310
Helix 38
38
B
144 157Right-handed alpha
Helix 39
39
B
170 174Right-handed alpha
Helix 40
40
B
201 216Right-handed alpha
Helix 41
41
B
224 230Right-handed alpha
Helix 42
42
B
232 244Right-handed alpha
Helix 43
43
B
251 254Right-handed 310
Helix 44
44
B
271 277Right-handed alpha
Helix 45
45
B
297 301Right-handed 310
Helix 46
46
B
303 308Right-handed alpha
Helix 47
47
B
338 350Right-handed alpha
Helix 48
48
B
361 374Right-handed alpha
Helix 49
49
B
383 399Right-handed alpha
Helix 50
50
B
411 421Right-handed alpha
Helix 51
51
B
440 452Right-handed alpha
Helix 52
52
B
463 469Right-handed alpha
Helix 53
53
B
472 480Right-handed alpha
Helix 54
54
B
493 505Right-handed alpha
Helix 55
55
B
508 512Right-handed 310
Helix 56
56
B
518 526Right-handed alpha
Helix 57
57
B
535 549Right-handed alpha
Helix 58
58
B
564 568Right-handed 310
Helix 59
59
B
568 572Right-handed 310
Helix 60
60
C
13 25Right-handed alpha
Helix 61
61
C
35 40Right-handed 310
Helix 62
62
C
56 72Right-handed alpha
Helix 63
63
C
82 99Right-handed alpha
Helix 64
64
C
110 114Right-handed 310
Helix 65
65
C
124 130Right-handed alpha
Helix 66
66
C
131 133Right-handed 310
Helix 67
67
C
141 143Right-handed 310
Helix 68
68
C
144 157Right-handed alpha
Helix 69
69
C
170 174Right-handed alpha
Helix 70
70
C
201 216Right-handed alpha
Helix 71
71
C
224 230Right-handed alpha
Helix 72
72
C
232 244Right-handed alpha
Helix 73
73
C
271 277Right-handed alpha
Helix 74
74
C
279 286Right-handed alpha
Helix 75
75
C
297 301Right-handed 310
Helix 76
76
C
303 308Right-handed alpha
Helix 77
77
C
338 350Right-handed alpha
Helix 78
78
C
361 373Right-handed alpha
Helix 79
79
C
383 399Right-handed alpha
Helix 80
80
C
411 421Right-handed alpha
Helix 81
81
C
440 452Right-handed alpha
Helix 82
82
C
463 469Right-handed alpha
Helix 83
83
C
472 480Right-handed alpha
Helix 84
84
C
493 505Right-handed alpha
Helix 85
85
C
508 512Right-handed 310
Helix 86
86
C
518 526Right-handed alpha
Helix 87
87
C
535 549Right-handed alpha
Helix 88
88
D
13 25Right-handed alpha
Helix 89
89
D
35 40Right-handed 310
Helix 90
90
D
56 72Right-handed alpha
Helix 91
91
D
82 99Right-handed alpha
Helix 92
92
D
110 114Right-handed 310
Helix 93
93
D
124 130Right-handed alpha
Helix 94
94
D
131 133Right-handed 310
Helix 95
95
D
141 143Right-handed 310
Helix 96
96
D
144 157Right-handed alpha
Helix 97
97
D
170 174Right-handed alpha
Helix 98
98
D
201 216Right-handed alpha
Helix 99
99
D
224 230Right-handed alpha
Helix 100
100
D
232 244Right-handed alpha
Helix 101
101
D
271 277Right-handed alpha
Helix 102
102
D
297 301Right-handed 310
Helix 103
103
D
303 308Right-handed alpha
Helix 104
104
D
338 350Right-handed alpha
Helix 105
105
D
361 373Right-handed alpha
Helix 106
106
D
383 399Right-handed alpha
Helix 107
107
D
411 421Right-handed alpha
Helix 108
108
D
440 452Right-handed alpha
Helix 109
109
D
463 469Right-handed alpha
Helix 110
110
D
472 480Right-handed alpha
Helix 111
111
D
493 505Right-handed alpha
Helix 112
112
D
508 512Right-handed 310
Helix 113
113
D
518 526Right-handed alpha
Helix 114
114
D
535 549Right-handed alpha
Helix 115
115
D
564 568Right-handed 310
Helix 116
116
D
568 572Right-handed 310
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There are 14 sheets in PDB entry 1UPA. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, A, DB, C,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
29 32parallel
Strand 3
A
75 79parallel
Strand 4
A
102 108parallel
Strand 5
A
164 169parallel
Strand 6
A
135 138parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 198first strand
Strand 2
C
196 198anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 267first strand
Strand 2
A
247 249parallel
Strand 3
A
219 223parallel
Strand 4
A
290 294parallel
Strand 5
A
314 319parallel
Strand 6
A
333 336parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 430first strand
Strand 2
A
405 408parallel
Strand 3
A
457 462parallel
Strand 4
A
484 489parallel
Strand 5
A
553 558parallel
Strand 6
A
529 532parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
29 32parallel
Strand 3
B
75 79parallel
Strand 4
B
102 108parallel
Strand 5
B
164 169parallel
Strand 6
B
135 138parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 198first strand
Strand 2
D
196 198anti-parallel
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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 267first strand
Strand 2
B
247 249parallel
Strand 3
B
219 223parallel
Strand 4
B
290 294parallel
Strand 5
B
314 319parallel
Strand 6
B
333 336parallel
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There are 6 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
429 430first strand
Strand 2
B
405 408parallel
Strand 3
B
457 462parallel
Strand 4
B
484 489parallel
Strand 5
B
553 558parallel
Strand 6
B
529 532parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 53first strand
Strand 2
C
29 32parallel
Strand 3
C
75 79parallel
Strand 4
C
102 108parallel
Strand 5
C
164 169parallel
Strand 6
C
135 138parallel
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There are 6 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
264 267first strand
Strand 2
C
247 249parallel
Strand 3
C
219 223parallel
Strand 4
C
290 294parallel
Strand 5
C
314 319parallel
Strand 6
C
333 336parallel
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There are 6 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
429 430first strand
Strand 2
C
405 408parallel
Strand 3
C
457 462parallel
Strand 4
C
484 489parallel
Strand 5
C
553 558parallel
Strand 6
C
529 532parallel
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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 53first strand
Strand 2
D
29 32parallel
Strand 3
D
75 79parallel
Strand 4
D
102 108parallel
Strand 5
D
164 169parallel
Strand 6
D
135 138parallel
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There are 6 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
264 267first strand
Strand 2
D
247 249parallel
Strand 3
D
219 223parallel
Strand 4
D
290 294parallel
Strand 5
D
314 319parallel
Strand 6
D
333 336parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
429 430first strand
Strand 2
D
405 408parallel
Strand 3
D
457 462parallel
Strand 4
D
484 489parallel
Strand 5
D
553 558parallel
Strand 6
D
529 532parallel
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