Analysis of interatomic Contacts of Structural Units in PDB entry:
1UPC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UPC entry

There are 6 chains in PDB entry 1UPC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 12SER 572
B
 PRO 12SER 572
C
 PRO 12SER 572
D
 PRO 12SER 572
E
 PRO 12SER 572
F
 PRO 12SER 572
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are178 helices in PDB entry 1UPC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 25Right-handed alpha
Helix 2
2
A
35 40Right-handed 310
Helix 3
3
A
56 72Right-handed alpha
Helix 4
4
A
82 99Right-handed alpha
Helix 5
5
A
110 114Right-handed 310
Helix 6
6
A
124 130Right-handed alpha
Helix 7
7
A
131 133Right-handed 310
Helix 8
8
A
141 143Right-handed 310
Helix 9
9
A
144 157Right-handed alpha
Helix 10
10
A
170 174Right-handed alpha
Helix 11
11
A
201 215Right-handed alpha
Helix 12
12
A
225 230Right-handed alpha
Helix 13
13
A
232 244Right-handed alpha
Helix 14
14
A
271 277Right-handed alpha
Helix 15
15
A
279 286Right-handed alpha
Helix 16
16
A
297 301Right-handed 310
Helix 17
17
A
303 308Right-handed alpha
Helix 18
18
A
338 350Right-handed alpha
Helix 19
19
A
361 374Right-handed alpha
Helix 20
20
A
383 399Right-handed alpha
Helix 21
21
A
411 421Right-handed alpha
Helix 22
22
A
440 452Right-handed alpha
Helix 23
23
A
463 469Right-handed alpha
Helix 24
24
A
472 480Right-handed alpha
Helix 25
25
A
493 505Right-handed alpha
Helix 26
26
A
508 512Right-handed 310
Helix 27
27
A
518 526Right-handed alpha
Helix 28
28
A
535 549Right-handed alpha
Helix 29
29
A
564 568Right-handed 310
Helix 30
30
A
568 572Right-handed 310
Helix 31
31
B
13 25Right-handed alpha
Helix 32
32
B
35 40Right-handed 310
Helix 33
33
B
56 72Right-handed alpha
Helix 34
34
B
82 99Right-handed alpha
Helix 35
35
B
110 114Right-handed 310
Helix 36
36
B
124 130Right-handed alpha
Helix 37
37
B
131 133Right-handed 310
Helix 38
38
B
141 143Right-handed 310
Helix 39
39
B
144 157Right-handed alpha
Helix 40
40
B
170 174Right-handed alpha
Helix 41
41
B
201 216Right-handed alpha
Helix 42
42
B
225 230Right-handed alpha
Helix 43
43
B
232 244Right-handed alpha
Helix 44
44
B
271 277Right-handed alpha
Helix 45
45
B
279 286Right-handed alpha
Helix 46
46
B
297 301Right-handed 310
Helix 47
47
B
303 308Right-handed alpha
Helix 48
48
B
338 350Right-handed alpha
Helix 49
49
B
361 374Right-handed alpha
Helix 50
50
B
383 399Right-handed alpha
Helix 51
51
B
411 421Right-handed alpha
Helix 52
52
B
440 452Right-handed alpha
Helix 53
53
B
463 469Right-handed alpha
Helix 54
54
B
472 480Right-handed alpha
Helix 55
55
B
493 505Right-handed alpha
Helix 56
56
B
508 512Right-handed 310
Helix 57
57
B
518 526Right-handed alpha
Helix 58
58
B
535 549Right-handed alpha
Helix 59
59
B
568 572Right-handed 310
Helix 60
60
C
13 25Right-handed alpha
Helix 61
61
C
35 40Right-handed 310
Helix 62
62
C
56 72Right-handed alpha
Helix 63
63
C
82 99Right-handed alpha
Helix 64
64
C
110 114Right-handed 310
Helix 65
65
C
124 130Right-handed alpha
Helix 66
66
C
131 133Right-handed 310
Helix 67
67
C
141 143Right-handed 310
Helix 68
68
C
144 157Right-handed alpha
Helix 69
69
C
170 174Right-handed alpha
Helix 70
70
C
201 215Right-handed alpha
Helix 71
71
C
224 230Right-handed alpha
Helix 72
72
C
232 244Right-handed alpha
Helix 73
73
C
271 277Right-handed alpha
Helix 74
74
C
279 286Right-handed alpha
Helix 75
75
C
297 301Right-handed 310
Helix 76
76
C
303 308Right-handed alpha
Helix 77
77
C
338 351Right-handed alpha
Helix 78
78
C
361 374Right-handed alpha
Helix 79
79
C
383 399Right-handed alpha
Helix 80
80
C
411 421Right-handed alpha
Helix 81
81
C
440 452Right-handed alpha
Helix 82
82
C
463 469Right-handed alpha
Helix 83
83
C
472 480Right-handed alpha
Helix 84
84
C
493 505Right-handed alpha
Helix 85
85
C
508 512Right-handed 310
Helix 86
86
C
518 526Right-handed alpha
Helix 87
87
C
535 548Right-handed alpha
Helix 88
88
C
564 568Right-handed 310
Helix 89
89
C
568 572Right-handed 310
Helix 90
90
D
13 25Right-handed alpha
Helix 91
91
D
35 40Right-handed 310
Helix 92
92
D
56 72Right-handed alpha
Helix 93
93
D
82 99Right-handed alpha
Helix 94
94
D
110 114Right-handed 310
Helix 95
95
D
124 130Right-handed alpha
Helix 96
96
D
131 133Right-handed 310
Helix 97
97
D
141 143Right-handed 310
Helix 98
98
D
144 157Right-handed alpha
Helix 99
99
D
170 174Right-handed alpha
Helix 100
100
D
201 216Right-handed alpha
Helix 101
101
D
224 230Right-handed alpha
Helix 102
102
D
232 244Right-handed alpha
Helix 103
103
D
271 277Right-handed alpha
Helix 104
104
D
279 286Right-handed alpha
Helix 105
105
D
297 301Right-handed 310
Helix 106
106
D
303 308Right-handed alpha
Helix 107
107
D
338 351Right-handed alpha
Helix 108
108
D
361 374Right-handed alpha
Helix 109
109
D
383 399Right-handed alpha
Helix 110
110
D
411 421Right-handed alpha
Helix 111
111
D
440 452Right-handed alpha
Helix 112
112
D
463 469Right-handed alpha
Helix 113
113
D
472 480Right-handed alpha
Helix 114
114
D
493 505Right-handed alpha
Helix 115
115
D
508 512Right-handed 310
Helix 116
116
D
518 526Right-handed alpha
Helix 117
117
D
535 549Right-handed alpha
Helix 118
118
D
564 568Right-handed 310
Helix 119
119
D
568 572Right-handed 310
Helix 120
120
E
13 25Right-handed alpha
Helix 121
121
E
35 40Right-handed 310
Helix 122
122
E
56 72Right-handed alpha
Helix 123
123
E
82 99Right-handed alpha
Helix 124
124
E
110 114Right-handed 310
Helix 125
125
E
124 130Right-handed alpha
Helix 126
126
E
131 133Right-handed 310
Helix 127
127
E
141 143Right-handed 310
Helix 128
128
E
144 157Right-handed alpha
Helix 129
129
E
170 174Right-handed alpha
Helix 130
130
E
201 216Right-handed alpha
Helix 131
131
E
224 230Right-handed alpha
Helix 132
132
E
232 244Right-handed alpha
Helix 133
133
E
271 277Right-handed alpha
Helix 134
134
E
279 286Right-handed alpha
Helix 135
135
E
297 301Right-handed 310
Helix 136
136
E
303 307Right-handed 310
Helix 137
137
E
338 350Right-handed alpha
Helix 138
138
E
361 374Right-handed alpha
Helix 139
139
E
383 399Right-handed alpha
Helix 140
140
E
411 421Right-handed alpha
Helix 141
141
E
440 452Right-handed alpha
Helix 142
142
E
463 469Right-handed alpha
Helix 143
143
E
472 480Right-handed alpha
Helix 144
144
E
493 505Right-handed alpha
Helix 145
145
E
508 512Right-handed 310
Helix 146
146
E
518 526Right-handed alpha
Helix 147
147
E
535 549Right-handed alpha
Helix 148
148
E
568 572Right-handed 310
Helix 149
149
F
13 25Right-handed alpha
Helix 150
150
F
35 40Right-handed 310
Helix 151
151
F
56 72Right-handed alpha
Helix 152
152
F
82 99Right-handed alpha
Helix 153
153
F
110 114Right-handed 310
Helix 154
154
F
124 130Right-handed alpha
Helix 155
155
F
131 133Right-handed 310
Helix 156
156
F
141 143Right-handed 310
Helix 157
157
F
144 157Right-handed alpha
Helix 158
158
F
170 174Right-handed alpha
Helix 159
159
F
201 216Right-handed alpha
Helix 160
160
F
224 230Right-handed alpha
Helix 161
161
F
232 244Right-handed alpha
Helix 162
162
F
271 277Right-handed alpha
Helix 163
163
F
279 286Right-handed alpha
Helix 164
164
F
297 301Right-handed 310
Helix 165
165
F
303 308Right-handed alpha
Helix 166
166
F
338 350Right-handed alpha
Helix 167
167
F
361 374Right-handed alpha
Helix 168
168
F
383 399Right-handed alpha
Helix 169
169
F
411 421Right-handed alpha
Helix 170
170
F
440 452Right-handed alpha
Helix 171
171
F
463 469Right-handed alpha
Helix 172
172
F
472 480Right-handed alpha
Helix 173
173
F
493 505Right-handed alpha
Helix 174
174
F
508 512Right-handed 310
Helix 175
175
F
518 526Right-handed alpha
Helix 176
176
F
535 549Right-handed alpha
Helix 177
177
F
564 568Right-handed 310
Helix 178
178
F
568 572Right-handed 310
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There are 20 sheets in PDB entry 1UPC. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, A, DB, C, EA, EB, EC, FA, FB, FC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
29 32parallel
Strand 3
A
75 79parallel
Strand 4
A
102 108parallel
Strand 5
A
164 169parallel
Strand 6
A
135 138parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 198first strand
Strand 2
C
196 198anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 267first strand
Strand 2
A
247 249parallel
Strand 3
A
219 223parallel
Strand 4
A
290 294parallel
Strand 5
A
314 319parallel
Strand 6
A
333 336parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 430first strand
Strand 2
A
405 408parallel
Strand 3
A
457 462parallel
Strand 4
A
484 489parallel
Strand 5
A
553 558parallel
Strand 6
A
529 532parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
29 32parallel
Strand 3
B
75 79parallel
Strand 4
B
102 108parallel
Strand 5
B
164 169parallel
Strand 6
B
135 138parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 198first strand
Strand 2
D
196 198anti-parallel
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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 267first strand
Strand 2
B
247 249parallel
Strand 3
B
219 223parallel
Strand 4
B
290 294parallel
Strand 5
B
314 319parallel
Strand 6
B
333 336parallel
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There are 6 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
429 430first strand
Strand 2
B
405 408parallel
Strand 3
B
457 462parallel
Strand 4
B
484 489parallel
Strand 5
B
553 558parallel
Strand 6
B
529 532parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 53first strand
Strand 2
C
29 32parallel
Strand 3
C
75 79parallel
Strand 4
C
102 108parallel
Strand 5
C
164 169parallel
Strand 6
C
135 138parallel
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There are 6 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
264 267first strand
Strand 2
C
247 249parallel
Strand 3
C
219 223parallel
Strand 4
C
290 294parallel
Strand 5
C
314 319parallel
Strand 6
C
333 336parallel
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There are 6 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
429 430first strand
Strand 2
C
405 408parallel
Strand 3
C
457 462parallel
Strand 4
C
483 489parallel
Strand 5
C
553 558parallel
Strand 6
C
529 532parallel
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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 53first strand
Strand 2
D
29 32parallel
Strand 3
D
75 79parallel
Strand 4
D
102 108parallel
Strand 5
D
164 169parallel
Strand 6
D
135 138parallel
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There are 6 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
264 267first strand
Strand 2
D
247 249parallel
Strand 3
D
219 223parallel
Strand 4
D
290 294parallel
Strand 5
D
314 319parallel
Strand 6
D
333 336parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
429 430first strand
Strand 2
D
405 408parallel
Strand 3
D
457 462parallel
Strand 4
D
484 489parallel
Strand 5
D
553 558parallel
Strand 6
D
529 532parallel
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There are 6 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
50 53first strand
Strand 2
E
29 32parallel
Strand 3
E
75 79parallel
Strand 4
E
102 108parallel
Strand 5
E
164 169parallel
Strand 6
E
135 138parallel
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There are 6 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
264 267first strand
Strand 2
E
247 249parallel
Strand 3
E
219 223parallel
Strand 4
E
290 294parallel
Strand 5
E
314 319parallel
Strand 6
E
333 336parallel
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There are 6 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
429 430first strand
Strand 2
E
405 408parallel
Strand 3
E
457 462parallel
Strand 4
E
484 489parallel
Strand 5
E
553 558parallel
Strand 6
E
529 532parallel
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There are 6 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
50 53first strand
Strand 2
F
29 32parallel
Strand 3
F
75 79parallel
Strand 4
F
102 108parallel
Strand 5
F
164 169parallel
Strand 6
F
135 138parallel
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There are 6 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
264 267first strand
Strand 2
F
247 249parallel
Strand 3
F
219 223parallel
Strand 4
F
290 294parallel
Strand 5
F
314 319parallel
Strand 6
F
333 336parallel
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There are 6 strands in FC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
429 430first strand
Strand 2
F
405 408parallel
Strand 3
F
457 462parallel
Strand 4
F
484 489parallel
Strand 5
F
553 558parallel
Strand 6
F
529 532parallel
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