Analysis of interatomic Contacts of Structural Units in PDB entry:
1UPK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UPK entry

There are 2 chains in PDB entry 1UPK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 10GLN 339
B
 ASP 1PHE 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 1UPK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 28Right-handed alpha
Helix 2
2
A
33 55Right-handed alpha
Helix 3
3
A
63 78Right-handed alpha
Helix 4
4
A
78 86Right-handed alpha
Helix 5
5
A
87 90Right-handed 310
Helix 6
6
A
91 107Right-handed alpha
Helix 7
7
A
114 122Right-handed alpha
Helix 8
8
A
124 133Right-handed alpha
Helix 9
9
A
134 136Right-handed 310
Helix 10
10
A
139 152Right-handed alpha
Helix 11
11
A
153 163Right-handed alpha
Helix 12
12
A
164 166Right-handed 310
Helix 13
13
A
167 173Right-handed alpha
Helix 14
14
A
177 194Right-handed alpha
Helix 15
15
A
195 206Right-handed alpha
Helix 16
16
A
206 218Right-handed alpha
Helix 17
17
A
222 239Right-handed alpha
Helix 18
18
A
242 250Right-handed alpha
Helix 19
19
A
252 263Right-handed alpha
Helix 20
20
A
267 284Right-handed alpha
Helix 21
21
A
288 298Right-handed alpha
Helix 22
22
A
298 309Right-handed alpha
Helix 23
23
A
317 332Right-handed alpha
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There are no sheets in PDB entry 1UPK
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