Analysis of interatomic Contacts of Structural Units in PDB entry:
1UPT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UPT entry

There are 8 chains in PDB entry 1UPT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 13GLN 181
B
 GLU 2171SER 2228
C
 MSE 18ARG 180
D
 GLY 2170MSE 2221
E
 HIS 13ARG 180
F
 GLU 2171SER 2226
G
 GLY 11ARG 180
H
 GLY 2170LEU 2220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 1UPT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 40Right-handed alpha
Helix 2
2
A
71 82Right-handed 310
Helix 3
3
A
99 112Right-handed alpha
Helix 4
4
A
113 117Right-handed 310
Helix 5
5
A
135 144Right-handed alpha
Helix 6
6
A
145 148Right-handed 310
Helix 7
7
A
165 179Right-handed alpha
Helix 8
8
B
2172 2187Right-handed alpha
Helix 9
9
B
2190 2202Right-handed alpha
Helix 10
10
B
2205 2226Right-handed alpha
Helix 11
11
C
29 40Right-handed alpha
Helix 12
12
C
74 82Right-handed 310
Helix 13
13
C
99 112Right-handed alpha
Helix 14
14
C
113 117Right-handed 310
Helix 15
15
C
135 143Right-handed alpha
Helix 16
16
C
165 179Right-handed alpha
Helix 17
17
D
2172 2187Right-handed alpha
Helix 18
18
D
2190 2202Right-handed alpha
Helix 19
19
D
2205 2218Right-handed alpha
Helix 20
20
E
29 40Right-handed alpha
Helix 21
21
E
71 82Right-handed 310
Helix 22
22
E
99 112Right-handed alpha
Helix 23
23
E
113 117Right-handed 310
Helix 24
24
E
135 143Right-handed alpha
Helix 25
25
E
144 148Right-handed 310
Helix 26
26
E
165 180Right-handed alpha
Helix 27
27
F
2172 2187Right-handed alpha
Helix 28
28
F
2190 2202Right-handed alpha
Helix 29
29
F
2205 2224Right-handed alpha
Helix 30
30
G
29 40Right-handed alpha
Helix 31
31
G
71 82Right-handed 310
Helix 32
32
G
96 98Right-handed 310
Helix 33
33
G
99 111Right-handed alpha
Helix 34
34
G
112 117Right-handed 310
Helix 35
35
G
135 143Right-handed alpha
Helix 36
36
G
144 148Right-handed 310
Helix 37
37
G
165 179Right-handed alpha
Helix 38
38
H
2172 2187Right-handed alpha
Helix 39
39
H
2190 2202Right-handed alpha
Helix 40
40
H
2205 2219Right-handed alpha
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There are 4 sheets in PDB entry 1UPT. Click on sheet of interest to get list of strands forming it: AA, CA, EA, GA,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 58first strand
Strand 2
A
61 68anti-parallel
Strand 3
A
18 23parallel
Strand 4
A
87 93parallel
Strand 5
A
120 126parallel
Strand 6
A
153 157parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 57first strand
Strand 2
C
62 68anti-parallel
Strand 3
C
19 23parallel
Strand 4
C
87 93parallel
Strand 5
C
120 126parallel
Strand 6
C
153 157parallel
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There are 6 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
51 58first strand
Strand 2
E
61 68anti-parallel
Strand 3
E
18 23parallel
Strand 4
E
87 93parallel
Strand 5
E
120 126parallel
Strand 6
E
153 157parallel
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There are 6 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
51 58first strand
Strand 2
G
61 68anti-parallel
Strand 3
G
17 23parallel
Strand 4
G
87 93parallel
Strand 5
G
120 126parallel
Strand 6
G
153 157parallel
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