Analysis of interatomic Contacts of Structural Units in PDB entry:
1UPW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UPW entry

There is 1 chain in PDB entry 1UPW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 219GLU 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1UPW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
221 237Right-handed alpha
Helix 2
2
A
260 287Right-handed alpha
Helix 3
3
A
291 295Right-handed 310
Helix 4
4
A
296 319Right-handed alpha
Helix 5
5
A
336 343Right-handed alpha
Helix 6
6
A
346 361Right-handed alpha
Helix 7
7
A
362 364Right-handed 310
Helix 8
8
A
366 379Right-handed alpha
Helix 9
9
A
388 411Right-handed alpha
Helix 10
10
A
416 445Right-handed alpha
Helix 11
11
A
450 458Right-handed alpha
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There is 1 sheet ( AA) in PDB entry 1UPW.

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 328first strand
Strand 2
A
334 335anti-parallel
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