Analysis of interatomic Contacts of Structural Units in PDB entry:
1UPX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UPX entry

There are 2 chains in PDB entry 1UPX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1GLY 544
B
 SER 1GLY 544
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 1UPX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 16Right-handed 310
Helix 2
2
A
27 54Right-handed alpha
Helix 3
3
A
59 73Right-handed alpha
Helix 4
4
A
80 101Right-handed alpha
Helix 5
5
A
109 114Right-handed alpha
Helix 6
6
A
118 127Right-handed alpha
Helix 7
7
A
130 134Right-handed 310
Helix 8
8
A
136 163Right-handed alpha
Helix 9
9
A
167 181Right-handed alpha
Helix 10
10
A
187 218Right-handed alpha
Helix 11
11
A
241 253Right-handed alpha
Helix 12
12
A
263 277Right-handed 310
Helix 13
13
A
287 289Right-handed 310
Helix 14
14
A
290 299Right-handed alpha
Helix 15
15
A
313 318Right-handed alpha
Helix 16
16
A
344 353Right-handed alpha
Helix 17
17
A
370 377Right-handed alpha
Helix 18
18
A
377 387Right-handed alpha
Helix 19
19
A
403 405Right-handed 310
Helix 20
20
A
406 416Right-handed alpha
Helix 21
21
A
426 432Right-handed 310
Helix 22
22
A
451 453Right-handed 310
Helix 23
23
A
454 469Right-handed alpha
Helix 24
24
A
473 477Right-handed 310
Helix 25
25
A
487 500Right-handed alpha
Helix 26
26
A
516 528Right-handed alpha
Helix 27
27
A
534 542Right-handed alpha
Helix 28
28
B
12 16Right-handed 310
Helix 29
29
B
27 53Right-handed alpha
Helix 30
30
B
59 73Right-handed alpha
Helix 31
31
B
80 100Right-handed alpha
Helix 32
32
B
109 114Right-handed alpha
Helix 33
33
B
118 127Right-handed alpha
Helix 34
34
B
130 134Right-handed 310
Helix 35
35
B
136 163Right-handed alpha
Helix 36
36
B
167 181Right-handed alpha
Helix 37
37
B
187 218Right-handed alpha
Helix 38
38
B
241 253Right-handed alpha
Helix 39
39
B
263 275Right-handed 310
Helix 40
40
B
287 289Right-handed 310
Helix 41
41
B
290 299Right-handed alpha
Helix 42
42
B
313 318Right-handed alpha
Helix 43
43
B
344 353Right-handed alpha
Helix 44
44
B
370 377Right-handed alpha
Helix 45
45
B
377 387Right-handed alpha
Helix 46
46
B
403 405Right-handed 310
Helix 47
47
B
406 416Right-handed alpha
Helix 48
48
B
426 432Right-handed 310
Helix 49
49
B
451 453Right-handed 310
Helix 50
50
B
454 469Right-handed alpha
Helix 51
51
B
473 477Right-handed 310
Helix 52
52
B
487 500Right-handed alpha
Helix 53
53
B
516 528Right-handed alpha
Helix 54
54
B
534 542Right-handed alpha
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There are 8 sheets in PDB entry 1UPX. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 226first strand
Strand 2
A
364 367anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 283first strand
Strand 2
A
258 261parallel
Strand 3
A
234 238parallel
Strand 4
A
302 304parallel
Strand 5
A
320 323parallel
Strand 6
A
332 334parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 448first strand
Strand 2
A
420 424parallel
Strand 3
A
392 395parallel
Strand 4
A
479 484parallel
Strand 5
A
506 508parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 440first strand
Strand 2
A
443 444anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 226first strand
Strand 2
B
364 367anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
280 283first strand
Strand 2
B
258 261parallel
Strand 3
B
234 238parallel
Strand 4
B
302 304parallel
Strand 5
B
320 323parallel
Strand 6
B
332 334parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
446 448first strand
Strand 2
B
420 424parallel
Strand 3
B
392 395parallel
Strand 4
B
479 484parallel
Strand 5
B
506 508parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
439 440first strand
Strand 2
B
443 444anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il