Analysis of interatomic Contacts of Structural Units in PDB entry:
1UQR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UQR entry

There are 12 chains in PDB entry 1UQR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 146
B
 MET 1ILE 146
C
 MET 1GLY 154
D
 MET 1MET 152
E
 MET 1ILE 146
F
 MET 1MET 152
G
 MET 1ILE 146
H
 MET 1GLY 154
I
 MET 1ILE 146
J
 MET 1ILE 146
K
 MET 1MET 152
L
 MET 1ILE 146
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are108 helices in PDB entry 1UQR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 15Right-handed 310
Helix 2
2
A
19 23Right-handed 310
Helix 3
3
A
27 42Right-handed alpha
Helix 4
4
A
53 64Right-handed alpha
Helix 5
5
A
77 82Right-handed alpha
Helix 6
6
A
82 93Right-handed alpha
Helix 7
7
A
103 107Right-handed 310
Helix 8
8
A
108 112Right-handed 310
Helix 9
9
A
116 120Right-handed 310
Helix 10
10
A
129 145Right-handed alpha
Helix 11
11
B
11 15Right-handed 310
Helix 12
12
B
27 42Right-handed alpha
Helix 13
13
B
53 64Right-handed alpha
Helix 14
14
B
77 82Right-handed alpha
Helix 15
15
B
82 93Right-handed alpha
Helix 16
16
B
103 107Right-handed 310
Helix 17
17
B
108 113Right-handed 310
Helix 18
18
B
116 120Right-handed 310
Helix 19
19
B
129 146Right-handed alpha
Helix 20
20
C
11 15Right-handed 310
Helix 21
21
C
27 42Right-handed alpha
Helix 22
22
C
53 65Right-handed alpha
Helix 23
23
C
77 82Right-handed alpha
Helix 24
24
C
82 93Right-handed alpha
Helix 25
25
C
103 107Right-handed 310
Helix 26
26
C
108 113Right-handed 310
Helix 27
27
C
116 120Right-handed 310
Helix 28
28
C
129 152Right-handed alpha
Helix 29
29
D
11 15Right-handed 310
Helix 30
30
D
27 42Right-handed alpha
Helix 31
31
D
53 64Right-handed alpha
Helix 32
32
D
77 82Right-handed alpha
Helix 33
33
D
82 93Right-handed alpha
Helix 34
34
D
103 107Right-handed 310
Helix 35
35
D
108 113Right-handed 310
Helix 36
36
D
116 120Right-handed 310
Helix 37
37
D
129 150Right-handed alpha
Helix 38
38
E
11 15Right-handed 310
Helix 39
39
E
27 41Right-handed alpha
Helix 40
40
E
53 64Right-handed alpha
Helix 41
41
E
77 82Right-handed alpha
Helix 42
42
E
82 92Right-handed alpha
Helix 43
43
E
103 107Right-handed 310
Helix 44
44
E
108 113Right-handed 310
Helix 45
45
E
116 120Right-handed 310
Helix 46
46
E
129 146Right-handed alpha
Helix 47
47
F
11 15Right-handed 310
Helix 48
48
F
27 42Right-handed alpha
Helix 49
49
F
53 65Right-handed alpha
Helix 50
50
F
77 82Right-handed alpha
Helix 51
51
F
82 93Right-handed alpha
Helix 52
52
F
103 107Right-handed 310
Helix 53
53
F
108 113Right-handed 310
Helix 54
54
F
116 120Right-handed 310
Helix 55
55
F
129 151Right-handed alpha
Helix 56
56
G
11 15Right-handed 310
Helix 57
57
G
27 42Right-handed alpha
Helix 58
58
G
53 64Right-handed alpha
Helix 59
59
G
77 82Right-handed alpha
Helix 60
60
G
82 93Right-handed alpha
Helix 61
61
G
103 107Right-handed 310
Helix 62
62
G
108 113Right-handed 310
Helix 63
63
G
116 120Right-handed 310
Helix 64
64
G
129 145Right-handed alpha
Helix 65
65
H
11 15Right-handed 310
Helix 66
66
H
27 42Right-handed alpha
Helix 67
67
H
53 64Right-handed alpha
Helix 68
68
H
77 82Right-handed alpha
Helix 69
69
H
82 92Right-handed alpha
Helix 70
70
H
103 107Right-handed 310
Helix 71
71
H
108 113Right-handed 310
Helix 72
72
H
116 120Right-handed 310
Helix 73
73
H
129 153Right-handed alpha
Helix 74
74
I
11 15Right-handed 310
Helix 75
75
I
27 42Right-handed alpha
Helix 76
76
I
53 65Right-handed alpha
Helix 77
77
I
77 82Right-handed alpha
Helix 78
78
I
82 93Right-handed alpha
Helix 79
79
I
103 107Right-handed 310
Helix 80
80
I
108 113Right-handed 310
Helix 81
81
I
116 120Right-handed 310
Helix 82
82
I
129 146Right-handed alpha
Helix 83
83
J
11 15Right-handed 310
Helix 84
84
J
27 42Right-handed alpha
Helix 85
85
J
53 65Right-handed alpha
Helix 86
86
J
77 82Right-handed alpha
Helix 87
87
J
82 93Right-handed alpha
Helix 88
88
J
103 107Right-handed 310
Helix 89
89
J
108 113Right-handed 310
Helix 90
90
J
116 120Right-handed 310
Helix 91
91
J
129 145Right-handed alpha
Helix 92
92
K
11 15Right-handed 310
Helix 93
93
K
27 42Right-handed alpha
Helix 94
94
K
53 65Right-handed alpha
Helix 95
95
K
77 82Right-handed alpha
Helix 96
96
K
82 93Right-handed alpha
Helix 97
97
K
103 107Right-handed 310
Helix 98
98
K
108 113Right-handed 310
Helix 99
99
K
116 120Right-handed 310
Helix 100
100
K
129 150Right-handed alpha
Helix 101
101
L
11 15Right-handed 310
Helix 102
102
L
27 41Right-handed alpha
Helix 103
103
L
53 64Right-handed alpha
Helix 104
104
L
77 82Right-handed alpha
Helix 105
105
L
82 92Right-handed alpha
Helix 106
106
L
103 107Right-handed 310
Helix 107
107
L
108 113Right-handed 310
Helix 108
108
L
129 143Right-handed alpha
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There are 6 sheets in PDB entry 1UQR. Click on sheet of interest to get list of strands forming it: AA, BA, CA, EA, FA, GA,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 50first strand
Strand 2
A
3 8parallel
Strand 3
A
70 74parallel
Strand 4
A
96 100parallel
Strand 5
A
122 125parallel
Strand 6
D
122 125anti-parallel
Strand 7
D
96 100parallel
Strand 8
D
70 74parallel
Strand 9
D
3 8parallel
Strand 10
D
45 50parallel
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There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 50first strand
Strand 2
B
3 8parallel
Strand 3
B
70 74parallel
Strand 4
B
96 100parallel
Strand 5
B
122 125parallel
Strand 6
H
122 125anti-parallel
Strand 7
H
96 100parallel
Strand 8
H
70 74parallel
Strand 9
H
3 8parallel
Strand 10
H
45 50parallel
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There are 10 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 50first strand
Strand 2
C
3 8parallel
Strand 3
C
70 74parallel
Strand 4
C
96 100parallel
Strand 5
C
122 125parallel
Strand 6
L
122 125anti-parallel
Strand 7
L
96 100parallel
Strand 8
L
70 74parallel
Strand 9
L
3 8parallel
Strand 10
L
45 50parallel
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There are 10 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
45 50first strand
Strand 2
E
3 8parallel
Strand 3
E
70 74parallel
Strand 4
E
96 100parallel
Strand 5
E
122 125parallel
Strand 6
K
122 125anti-parallel
Strand 7
K
96 100parallel
Strand 8
K
70 74parallel
Strand 9
K
3 8parallel
Strand 10
K
45 50parallel
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There are 10 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
45 50first strand
Strand 2
F
3 8parallel
Strand 3
F
70 74parallel
Strand 4
F
96 100parallel
Strand 5
F
122 125parallel
Strand 6
I
122 125anti-parallel
Strand 7
I
96 100parallel
Strand 8
I
70 74parallel
Strand 9
I
3 8parallel
Strand 10
I
45 50parallel
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There are 10 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
45 50first strand
Strand 2
G
3 8parallel
Strand 3
G
70 74parallel
Strand 4
G
96 100parallel
Strand 5
G
122 125parallel
Strand 6
J
122 125anti-parallel
Strand 7
J
96 100parallel
Strand 8
J
70 74parallel
Strand 9
J
3 8parallel
Strand 10
J
45 50parallel
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