Analysis of interatomic Contacts of Structural Units in PDB entry:
1UQU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UQU entry

There are 2 chains in PDB entry 1UQU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ARG 456
B
 SER 1ARG 456
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 1UQU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 35Right-handed alpha
Helix 2
2
A
68 76Right-handed alpha
Helix 3
3
A
78 83Right-handed alpha
Helix 4
4
A
83 89Right-handed alpha
Helix 5
5
A
91 95Right-handed 310
Helix 6
6
A
98 117Right-handed alpha
Helix 7
7
A
118 120Right-handed 310
Helix 8
8
A
131 134Right-handed 310
Helix 9
9
A
135 142Right-handed alpha
Helix 10
10
A
159 164Right-handed alpha
Helix 11
11
A
168 177Right-handed alpha
Helix 12
12
A
186 201Right-handed alpha
Helix 13
13
A
228 238Right-handed alpha
Helix 14
14
A
241 251Right-handed alpha
Helix 15
15
A
264 267Right-handed 310
Helix 16
16
A
268 283Right-handed alpha
Helix 17
17
A
284 287Right-handed 310
Helix 18
18
A
303 325Right-handed alpha
Helix 19
19
A
340 351Right-handed alpha
Helix 20
20
A
364 374Right-handed alpha
Helix 21
21
A
389 393Right-handed 310
Helix 22
22
A
404 417Right-handed alpha
Helix 23
23
A
419 437Right-handed alpha
Helix 24
24
A
438 453Right-handed alpha
Helix 25
25
B
22 35Right-handed alpha
Helix 26
26
B
68 76Right-handed alpha
Helix 27
27
B
78 83Right-handed alpha
Helix 28
28
B
83 89Right-handed alpha
Helix 29
29
B
91 95Right-handed 310
Helix 30
30
B
98 117Right-handed alpha
Helix 31
31
B
118 120Right-handed 310
Helix 32
32
B
131 134Right-handed 310
Helix 33
33
B
135 142Right-handed alpha
Helix 34
34
B
159 164Right-handed alpha
Helix 35
35
B
168 177Right-handed alpha
Helix 36
36
B
186 201Right-handed alpha
Helix 37
37
B
228 238Right-handed alpha
Helix 38
38
B
241 245Right-handed 310
Helix 39
39
B
264 267Right-handed 310
Helix 40
40
B
268 283Right-handed alpha
Helix 41
41
B
284 287Right-handed 310
Helix 42
42
B
307 325Right-handed alpha
Helix 43
43
B
340 351Right-handed alpha
Helix 44
44
B
364 374Right-handed alpha
Helix 45
45
B
389 393Right-handed 310
Helix 46
46
B
404 417Right-handed alpha
Helix 47
47
B
419 437Right-handed alpha
Helix 48
48
B
438 453Right-handed alpha
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There are 4 sheets in PDB entry 1UQU. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 57first strand
Strand 2
A
60 67anti-parallel
Strand 3
A
36 45parallel
Strand 4
A
3 9parallel
Strand 5
A
125 129parallel
Strand 6
A
149 152parallel
Strand 7
A
181 184parallel
Strand 8
A
216 222parallel
Strand 9
A
210 213anti-parallel
Strand 10
A
203 206anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 335first strand
Strand 2
A
290 295parallel
Strand 3
A
255 260parallel
Strand 4
A
353 356parallel
Strand 5
A
381 385parallel
Strand 6
A
398 400parallel
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There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
63 65anti-parallel
Strand 3
B
36 41parallel
Strand 4
B
3 9parallel
Strand 5
B
125 129parallel
Strand 6
B
148 152parallel
Strand 7
B
181 184parallel
Strand 8
B
216 222parallel
Strand 9
B
210 213anti-parallel
Strand 10
B
203 207anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 335first strand
Strand 2
B
290 295parallel
Strand 3
B
255 260parallel
Strand 4
B
353 356parallel
Strand 5
B
381 385parallel
Strand 6
B
398 400parallel
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