Analysis of interatomic Contacts of Structural Units in PDB entry:
1UQW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UQW entry

There are 2 chains in PDB entry 1UQW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3GLN 489
B
 ALA 3GLN 489
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 1UQW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 23Right-handed 310
Helix 2
2
A
25 33Right-handed alpha
Helix 3
3
A
82 94Right-handed alpha
Helix 4
4
A
95 99Right-handed 310
Helix 5
5
A
102 106Right-handed 310
Helix 6
6
A
130 136Right-handed alpha
Helix 7
7
A
144 152Right-handed alpha
Helix 8
8
A
153 155Right-handed 310
Helix 9
9
A
202 213Right-handed alpha
Helix 10
10
A
222 232Right-handed alpha
Helix 11
11
A
255 258Right-handed 310
Helix 12
12
A
259 270Right-handed alpha
Helix 13
13
A
271 281Right-handed alpha
Helix 14
14
A
307 319Right-handed alpha
Helix 15
15
A
336 351Right-handed alpha
Helix 16
16
A
361 369Right-handed alpha
Helix 17
17
A
392 402Right-handed alpha
Helix 18
18
A
403 406Right-handed 310
Helix 19
19
A
418 430Right-handed alpha
Helix 20
20
A
433 452Right-handed alpha
Helix 21
21
B
19 23Right-handed 310
Helix 22
22
B
25 33Right-handed alpha
Helix 23
23
B
82 95Right-handed alpha
Helix 24
24
B
96 99Right-handed 310
Helix 25
25
B
102 106Right-handed 310
Helix 26
26
B
130 136Right-handed alpha
Helix 27
27
B
144 152Right-handed alpha
Helix 28
28
B
153 155Right-handed 310
Helix 29
29
B
202 212Right-handed alpha
Helix 30
30
B
222 232Right-handed alpha
Helix 31
31
B
254 258Right-handed 310
Helix 32
32
B
259 270Right-handed alpha
Helix 33
33
B
271 279Right-handed alpha
Helix 34
34
B
307 317Right-handed alpha
Helix 35
35
B
336 349Right-handed alpha
Helix 36
36
B
361 369Right-handed alpha
Helix 37
37
B
393 402Right-handed alpha
Helix 38
38
B
403 406Right-handed 310
Helix 39
39
B
418 429Right-handed alpha
Helix 40
40
B
433 452Right-handed alpha
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There are 12 sheets in PDB entry 1UQW. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 171first strand
Strand 2
A
175 180anti-parallel
Strand 3
A
194 199anti-parallel
Strand 4
A
6 11parallel
Strand 5
A
217 218parallel
Strand 6
A
454 467anti-parallel
Strand 7
A
235 250anti-parallel
Strand 8
A
381 387anti-parallel
Strand 9
A
324 331parallel
Strand 10
A
353 360parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 171first strand
Strand 2
A
175 180anti-parallel
Strand 3
A
194 199anti-parallel
Strand 4
A
6 11parallel
Strand 5
A
217 218parallel
Strand 6
A
454 467anti-parallel
Strand 7
A
284 286anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
48 50anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 58first strand
Strand 2
A
64 69anti-parallel
Strand 3
A
119 124anti-parallel
Strand 4
A
109 116anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 471first strand
Strand 2
A
487 488anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 475first strand
Strand 2
A
481 482anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 170first strand
Strand 2
B
176 180anti-parallel
Strand 3
B
194 199anti-parallel
Strand 4
B
6 11parallel
Strand 5
B
217 219parallel
Strand 6
B
458 467anti-parallel
Strand 7
B
235 250anti-parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 170first strand
Strand 2
B
176 180anti-parallel
Strand 3
B
194 199anti-parallel
Strand 4
B
6 11parallel
Strand 5
B
217 219parallel
Strand 6
B
458 467anti-parallel
Strand 7
B
284 286anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 42first strand
Strand 2
B
48 50anti-parallel
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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 58first strand
Strand 2
B
64 69anti-parallel
Strand 3
B
119 124anti-parallel
Strand 4
B
109 116anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
470 471first strand
Strand 2
B
487 488anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
474 475first strand
Strand 2
B
481 482anti-parallel
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