Analysis of interatomic Contacts of Structural Units in PDB entry:
1URH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1URH entry

There are 4 chains in PDB entry 1URH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2SER 236
A
 GLY 238TRP 268
B
 THR 2SER 236
B
 GLY 238TRP 268
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 1URH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 13Right-handed alpha
Helix 2
2
A
36 44Right-handed alpha
Helix 3
3
A
53 58Right-handed 310
Helix 4
4
A
70 81Right-handed alpha
Helix 5
5
A
99 110Right-handed alpha
Helix 6
6
A
120 128Right-handed alpha
Helix 7
7
A
149 152Right-handed 310
Helix 8
8
A
155 166Right-handed alpha
Helix 9
9
A
175 180Right-handed alpha
Helix 10
10
A
202 206Right-handed 310
Helix 11
11
A
214 224Right-handed alpha
Helix 12
12
A
242 253Right-handed alpha
Helix 13
13
B
7 14Right-handed alpha
Helix 14
14
B
36 43Right-handed alpha
Helix 15
15
B
54 58Right-handed 310
Helix 16
16
B
72 82Right-handed alpha
Helix 17
17
B
99 110Right-handed alpha
Helix 18
18
B
120 128Right-handed alpha
Helix 19
19
B
149 151Right-handed 310
Helix 20
20
B
155 166Right-handed alpha
Helix 21
21
B
175 180Right-handed alpha
Helix 22
22
B
202 205Right-handed 310
Helix 23
23
B
214 224Right-handed alpha
Helix 24
24
B
239 241Right-handed 310
Helix 25
25
B
242 253Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 1URH. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, BC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
115 118parallel
Strand 3
A
88 92parallel
Strand 4
A
20 24parallel
Strand 5
A
50 51parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
A
169 172parallel
Strand 3
A
233 236parallel
Strand 4
A
259 260parallel
Back to list of sheets
Back to top of page

There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
115 118parallel
Strand 3
B
88 92parallel
Strand 4
B
20 24parallel
Strand 5
B
50 51parallel
Back to list of sheets
Back to top of page

There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 154first strand
Strand 2
B
258 261parallel
Strand 3
B
233 236parallel
Strand 4
B
169 172parallel
Strand 5
B
199 200parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 208first strand
Strand 2
B
211 212anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il