Analysis of interatomic Contacts of Structural Units in PDB entry:
1URJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1URJ entry

There are 2 chains in PDB entry 1URJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 9ALA 1130
B
 THR 9ALA 1130
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 1URJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 38Right-handed alpha
Helix 2
2
A
99 103Right-handed 310
Helix 3
3
A
111 124Right-handed alpha
Helix 4
4
A
131 138Right-handed 310
Helix 5
5
A
140 149Right-handed alpha
Helix 6
6
A
165 171Right-handed alpha
Helix 7
7
A
178 181Right-handed 310
Helix 8
8
A
200 203Right-handed 310
Helix 9
9
A
233 244Right-handed alpha
Helix 10
10
A
244 252Right-handed alpha
Helix 11
11
A
256 270Right-handed alpha
Helix 12
12
A
309 332Right-handed alpha
Helix 13
13
A
342 349Right-handed 310
Helix 14
14
A
357 378Right-handed alpha
Helix 15
15
A
447 455Right-handed alpha
Helix 16
16
A
458 470Right-handed alpha
Helix 17
17
A
484 491Right-handed alpha
Helix 18
18
A
510 518Right-handed alpha
Helix 19
19
A
519 522Right-handed 310
Helix 20
20
A
574 589Right-handed alpha
Helix 21
21
A
602 607Right-handed alpha
Helix 22
22
A
609 637Right-handed alpha
Helix 23
23
A
642 648Right-handed alpha
Helix 24
24
A
666 694Right-handed alpha
Helix 25
25
A
702 717Right-handed alpha
Helix 26
26
A
809 813Right-handed 310
Helix 27
27
A
815 822Right-handed alpha
Helix 28
28
A
822 827Right-handed alpha
Helix 29
29
A
839 850Right-handed alpha
Helix 30
30
A
860 879Right-handed alpha
Helix 31
31
A
887 904Right-handed alpha
Helix 32
32
A
927 934Right-handed 310
Helix 33
33
A
940 951Right-handed alpha
Helix 34
34
A
952 955Right-handed 310
Helix 35
35
A
968 975Right-handed alpha
Helix 36
36
A
1008 1012Right-handed 310
Helix 37
37
A
1048 1057Right-handed alpha
Helix 38
38
A
1063 1074Right-handed alpha
Helix 39
39
A
1077 1083Right-handed 310
Helix 40
40
A
1084 1092Right-handed alpha
Helix 41
41
A
1094 1112Right-handed alpha
Helix 42
42
A
1119 1126Right-handed alpha
Helix 43
43
B
30 38Right-handed alpha
Helix 44
44
B
99 103Right-handed 310
Helix 45
45
B
111 124Right-handed alpha
Helix 46
46
B
131 138Right-handed 310
Helix 47
47
B
140 149Right-handed alpha
Helix 48
48
B
165 171Right-handed alpha
Helix 49
49
B
178 181Right-handed 310
Helix 50
50
B
200 203Right-handed 310
Helix 51
51
B
233 244Right-handed alpha
Helix 52
52
B
244 252Right-handed alpha
Helix 53
53
B
256 270Right-handed alpha
Helix 54
54
B
309 332Right-handed alpha
Helix 55
55
B
342 349Right-handed 310
Helix 56
56
B
357 378Right-handed alpha
Helix 57
57
B
447 455Right-handed alpha
Helix 58
58
B
458 470Right-handed alpha
Helix 59
59
B
484 491Right-handed alpha
Helix 60
60
B
510 518Right-handed alpha
Helix 61
61
B
519 522Right-handed 310
Helix 62
62
B
574 589Right-handed alpha
Helix 63
63
B
602 607Right-handed alpha
Helix 64
64
B
609 637Right-handed alpha
Helix 65
65
B
642 648Right-handed alpha
Helix 66
66
B
666 694Right-handed alpha
Helix 67
67
B
702 717Right-handed alpha
Helix 68
68
B
809 813Right-handed 310
Helix 69
69
B
815 822Right-handed alpha
Helix 70
70
B
822 827Right-handed alpha
Helix 71
71
B
839 849Right-handed alpha
Helix 72
72
B
858 879Right-handed alpha
Helix 73
73
B
887 904Right-handed alpha
Helix 74
74
B
927 934Right-handed 310
Helix 75
75
B
940 951Right-handed alpha
Helix 76
76
B
952 955Right-handed 310
Helix 77
77
B
968 975Right-handed alpha
Helix 78
78
B
1008 1012Right-handed 310
Helix 79
79
B
1048 1057Right-handed alpha
Helix 80
80
B
1063 1074Right-handed alpha
Helix 81
81
B
1077 1082Right-handed 310
Helix 82
82
B
1084 1092Right-handed alpha
Helix 83
83
B
1094 1112Right-handed alpha
Helix 84
84
B
1119 1126Right-handed alpha
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There are 14 sheets in PDB entry 1URJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE, BF, BG,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
64 73parallel
Strand 3
A
81 89anti-parallel
Strand 4
A
759 760parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
93 98anti-parallel
Strand 3
A
155 161anti-parallel
Strand 4
A
19 25anti-parallel
Strand 5
A
189 198anti-parallel
Strand 6
A
174 176anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
93 98anti-parallel
Strand 3
A
155 161anti-parallel
Strand 4
A
19 25anti-parallel
Strand 5
A
189 198anti-parallel
Strand 6
A
182 186anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 285first strand
Strand 2
A
420 421anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 390first strand
Strand 2
A
407 411anti-parallel
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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
533 538first strand
Strand 2
A
978 987anti-parallel
Strand 3
A
1022 1028anti-parallel
Strand 4
A
913 922parallel
Strand 5
A
960 966anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
533 538first strand
Strand 2
A
978 987anti-parallel
Strand 3
A
999 1004anti-parallel
Strand 4
A
764 776parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
724 733parallel
Strand 3
B
764 776anti-parallel
Strand 4
B
651 657anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
724 733parallel
Strand 3
B
764 776anti-parallel
Strand 4
B
999 1004parallel
Strand 5
B
978 987anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 16first strand
Strand 2
B
64 73parallel
Strand 3
B
81 89anti-parallel
Strand 4
B
758 760parallel
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There are 9 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 50first strand
Strand 2
B
93 98anti-parallel
Strand 3
B
155 161anti-parallel
Strand 4
B
19 25anti-parallel
Strand 5
B
189 198anti-parallel
Strand 6
B
174 176anti-parallel
Strand 7
B
189 198anti-parallel
Strand 8
B
182 186anti-parallel
Strand 9
B
189 198anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 285first strand
Strand 2
B
420 421anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
385 390first strand
Strand 2
B
407 411anti-parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
740 741first strand
Strand 2
B
753 754anti-parallel
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