Analysis of interatomic Contacts of Structural Units in PDB entry:
1US8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1US8 entry

There are 2 chains in PDB entry 1US8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 147
B
 LEU 739SER 882
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1US8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 49Right-handed alpha
Helix 2
2
A
115 127Right-handed alpha
Helix 3
3
A
128 136Right-handed alpha
Helix 4
4
A
140 147Right-handed alpha
Helix 5
5
B
739 760Right-handed alpha
Helix 6
6
B
788 792Right-handed 310
Helix 7
7
B
793 814Right-handed alpha
Helix 8
8
B
829 843Right-handed alpha
Helix 9
9
B
844 847Right-handed 310
Helix 10
10
B
856 863Right-handed 310
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There are 3 sheets in PDB entry 1US8. Click on sheet of interest to get list of strands forming it: AA, AB, BA,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 20first strand
Strand 2
A
2 9anti-parallel
Strand 3
A
69 77anti-parallel
Strand 4
A
80 88anti-parallel
Strand 5
A
96 104anti-parallel
Strand 6
A
107 110anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 139first strand
Strand 2
B
818 822parallel
Strand 3
B
849 854parallel
Strand 4
A
24 29parallel
Strand 5
B
865 872parallel
Strand 6
B
875 880anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
766 770first strand
Strand 2
B
777 782anti-parallel
Strand 3
B
785 787anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il