Analysis of interatomic Contacts of Structural Units in PDB entry:
1UU0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UU0 entry

There are 4 chains in PDB entry 1UU0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 7LYS 335
B
 LYS 21LYS 335
C
 LYS 21GLU 332
D
 ILE 7LYS 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 58 helices in PDB entry 1UU0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 45Right-handed alpha
Helix 2
2
A
46 52Right-handed alpha
Helix 3
3
A
58 70Right-handed alpha
Helix 4
4
A
83 96Right-handed alpha
Helix 5
5
A
107 117Right-handed alpha
Helix 6
6
A
156 165Right-handed alpha
Helix 7
7
A
183 190Right-handed 310
Helix 8
8
A
206 210Right-handed 310
Helix 9
9
A
217 228Right-handed alpha
Helix 10
10
A
234 246Right-handed alpha
Helix 11
11
A
247 272Right-handed alpha
Helix 12
12
A
289 303Right-handed alpha
Helix 13
13
A
320 330Right-handed alpha
Helix 14
14
B
34 45Right-handed alpha
Helix 15
15
B
46 52Right-handed alpha
Helix 16
16
B
58 70Right-handed alpha
Helix 17
17
B
75 77Right-handed 310
Helix 18
18
B
83 93Right-handed alpha
Helix 19
19
B
94 96Right-handed 310
Helix 20
20
B
107 117Right-handed alpha
Helix 21
21
B
156 165Right-handed alpha
Helix 22
22
B
176 181Right-handed alpha
Helix 23
23
B
184 190Right-handed 310
Helix 24
24
B
217 228Right-handed alpha
Helix 25
25
B
234 247Right-handed alpha
Helix 26
26
B
247 272Right-handed alpha
Helix 27
27
B
289 303Right-handed alpha
Helix 28
28
B
320 333Right-handed alpha
Helix 29
29
C
34 44Right-handed alpha
Helix 30
30
C
46 52Right-handed alpha
Helix 31
31
C
58 67Right-handed alpha
Helix 32
32
C
75 77Right-handed 310
Helix 33
33
C
84 93Right-handed alpha
Helix 34
34
C
106 117Right-handed alpha
Helix 35
35
C
156 165Right-handed alpha
Helix 36
36
C
176 181Right-handed alpha
Helix 37
37
C
185 189Right-handed 310
Helix 38
38
C
217 228Right-handed alpha
Helix 39
39
C
234 246Right-handed alpha
Helix 40
40
C
252 262Right-handed alpha
Helix 41
41
C
268 273Right-handed alpha
Helix 42
42
C
293 302Right-handed alpha
Helix 43
43
C
320 325Right-handed alpha
Helix 44
44
D
34 45Right-handed alpha
Helix 45
45
D
46 50Right-handed 310
Helix 46
46
D
58 70Right-handed alpha
Helix 47
47
D
75 77Right-handed 310
Helix 48
48
D
84 96Right-handed alpha
Helix 49
49
D
107 117Right-handed alpha
Helix 50
50
D
156 165Right-handed alpha
Helix 51
51
D
176 181Right-handed alpha
Helix 52
52
D
185 190Right-handed 310
Helix 53
53
D
206 209Right-handed 310
Helix 54
54
D
217 228Right-handed alpha
Helix 55
55
D
234 247Right-handed alpha
Helix 56
56
D
247 272Right-handed alpha
Helix 57
57
D
289 303Right-handed alpha
Helix 58
58
D
320 333Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 1UU0. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, BC, CA, CB, A, DB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
305 309parallel
Strand 3
A
313 317anti-parallel
Strand 4
A
283 287anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 82first strand
Strand 2
A
212 216anti-parallel
Strand 3
A
194 197anti-parallel
Strand 4
A
169 173parallel
Strand 5
A
140 145parallel
Strand 6
A
98 101parallel
Strand 7
A
119 122parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
B
305 306parallel
Back to list of sheets
Back to top of page

There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 82first strand
Strand 2
B
212 216anti-parallel
Strand 3
B
194 199anti-parallel
Strand 4
B
169 173parallel
Strand 5
B
140 144parallel
Strand 6
B
98 101parallel
Strand 7
B
119 122parallel
Back to list of sheets
Back to top of page

There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 287first strand
Strand 2
B
313 317anti-parallel
Strand 3
B
308 309anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 82first strand
Strand 2
C
212 216anti-parallel
Strand 3
C
194 197anti-parallel
Strand 4
C
169 173parallel
Strand 5
C
140 143parallel
Strand 6
C
98 101parallel
Strand 7
C
119 120parallel
Back to list of sheets
Back to top of page

There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
283 285first strand
Strand 2
C
315 317anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
22 24first strand
Strand 2
D
305 310parallel
Strand 3
D
313 317anti-parallel
Strand 4
D
283 287anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
79 83first strand
Strand 2
D
211 216anti-parallel
Strand 3
D
194 199anti-parallel
Strand 4
D
169 173parallel
Strand 5
D
140 145parallel
Strand 6
D
98 101parallel
Strand 7
D
119 122parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il