Analysis of interatomic Contacts of Structural Units in PDB entry:
1UUF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UUF entry

There is 1 chain in PDB entry 1UUF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3ASP 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1UUF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 49Right-handed alpha
Helix 2
2
A
96 101Right-handed alpha
Helix 3
3
A
103 107Right-handed 310
Helix 4
4
A
138 140Right-handed 310
Helix 5
5
A
146 148Right-handed 310
Helix 6
6
A
149 154Right-handed alpha
Helix 7
7
A
155 157Right-handed 310
Helix 8
8
A
158 170Right-handed alpha
Helix 9
9
A
184 197Right-handed alpha
Helix 10
10
A
207 209Right-handed 310
Helix 11
11
A
210 218Right-handed alpha
Helix 12
12
A
227 233Right-handed alpha
Helix 13
13
A
250 256Right-handed alpha
Helix 14
14
A
278 284Right-handed alpha
Helix 15
15
A
296 311Right-handed alpha
Helix 16
16
A
320 322Right-handed 310
Helix 17
17
A
323 333Right-handed alpha
Helix 18
18
A
345 348Right-handed 310
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There are 5 sheets in PDB entry 1UUF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
16 19anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 136first strand
Strand 2
A
29 38anti-parallel
Strand 3
A
64 71anti-parallel
Strand 4
A
83 86anti-parallel
Strand 5
A
141 142anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 136first strand
Strand 2
A
29 38anti-parallel
Strand 3
A
339 343anti-parallel
Strand 4
A
316 319parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
111 112anti-parallel
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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 224first strand
Strand 2
A
200 205parallel
Strand 3
A
177 181parallel
Strand 4
A
238 243parallel
Strand 5
A
258 266parallel
Strand 6
A
288 291parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il