Analysis of interatomic Contacts of Structural Units in PDB entry:
1UUR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UUR entry

There are 2 chains in PDB entry 1UUR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 242GLY 701
A
 GLU 703SER 707
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 1UUR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
244 275Right-handed alpha
Helix 2
2
A
281 316Right-handed alpha
Helix 3
3
A
319 352Right-handed alpha
Helix 4
4
A
487 502Right-handed alpha
Helix 5
5
A
509 524Right-handed alpha
Helix 6
6
A
536 547Right-handed alpha
Helix 7
7
A
556 576Right-handed alpha
Helix 8
8
A
578 585Right-handed alpha
Helix 9
9
A
593 600Right-handed alpha
Helix 10
10
A
640 644Right-handed 310
Helix 11
11
A
650 656Right-handed alpha
Helix 12
12
A
681 686Right-handed alpha
Helix 13
13
A
687 690Right-handed 310
Back to top of page

There are 7 sheets in PDB entry 1UUR. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 368first strand
Strand 2
A
387 391anti-parallel
Strand 3
A
437 439anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 376first strand
Strand 2
A
480 482parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 429first strand
Strand 2
A
398 409anti-parallel
Strand 3
A
454 463anti-parallel
Strand 4
A
468 472anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 425first strand
Strand 2
A
443 444anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
506 508first strand
Strand 2
A
553 555anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
609 613first strand
Strand 2
A
621 626anti-parallel
Strand 3
A
634 638anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
665 669first strand
Strand 2
A
675 679anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il