Analysis of interatomic Contacts of Structural Units in PDB entry:
1UUZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UUZ entry

There are 4 chains in PDB entry 1UUZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1LEU 130
B
 GLU 2LEU 130
C
 LYS 1LEU 129
D
 LYS 1LEU 129
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 1UUZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 10Right-handed alpha
Helix 2
2
A
12 23Right-handed alpha
Helix 3
3
A
30 35Right-handed alpha
Helix 4
4
A
97 101Right-handed 310
Helix 5
5
A
111 124Right-handed alpha
Helix 6
6
B
5 10Right-handed alpha
Helix 7
7
B
14 23Right-handed alpha
Helix 8
8
B
30 35Right-handed alpha
Helix 9
9
B
92 97Right-handed alpha
Helix 10
10
B
98 101Right-handed 310
Helix 11
11
B
111 123Right-handed alpha
Helix 12
12
C
4 15Right-handed alpha
Helix 13
13
C
24 37Right-handed alpha
Helix 14
14
C
80 85Right-handed 310
Helix 15
15
C
88 100Right-handed alpha
Helix 16
16
C
103 107Right-handed 310
Helix 17
17
C
108 115Right-handed alpha
Helix 18
18
C
119 125Right-handed 310
Helix 19
19
D
4 15Right-handed alpha
Helix 20
20
D
24 37Right-handed alpha
Helix 21
21
D
80 85Right-handed 310
Helix 22
22
D
88 100Right-handed alpha
Helix 23
23
D
103 107Right-handed 310
Helix 24
24
D
108 115Right-handed alpha
Helix 25
25
D
119 124Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 1UUZ. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 48first strand
Strand 2
A
51 59anti-parallel
Strand 3
A
67 74anti-parallel
Strand 4
A
80 86anti-parallel
Strand 5
A
103 107anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 48first strand
Strand 2
B
51 59anti-parallel
Strand 3
B
67 74anti-parallel
Strand 4
B
80 86anti-parallel
Strand 5
B
103 107anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 45first strand
Strand 2
C
51 53anti-parallel
Strand 3
C
58 59anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
43 45first strand
Strand 2
D
51 53anti-parallel
Strand 3
D
58 59anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il