Analysis of interatomic Contacts of Structural Units in PDB entry:
1UW4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UW4 entry

There are 4 chains in PDB entry 1UW4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 50ALA 140
B
 ARG 768ASN 1015
C
 LEU 50ALA 140
D
 ARG 768ASN 1015
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 1UW4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
63 72Right-handed alpha
Helix 2
2
A
104 115Right-handed alpha
Helix 3
3
B
769 781Right-handed alpha
Helix 4
4
B
787 797Right-handed alpha
Helix 5
5
B
802 815Right-handed alpha
Helix 6
6
B
816 819Right-handed 310
Helix 7
7
B
820 822Right-handed 310
Helix 8
8
B
823 835Right-handed alpha
Helix 9
9
B
838 860Right-handed alpha
Helix 10
10
B
861 863Right-handed 310
Helix 11
11
B
864 881Right-handed alpha
Helix 12
12
B
885 899Right-handed alpha
Helix 13
13
B
916 930Right-handed alpha
Helix 14
14
B
931 933Right-handed 310
Helix 15
15
B
935 958Right-handed alpha
Helix 16
16
B
969 984Right-handed alpha
Helix 17
17
B
992 1012Right-handed alpha
Helix 18
18
C
63 72Right-handed alpha
Helix 19
19
C
103 115Right-handed alpha
Helix 20
20
D
769 781Right-handed alpha
Helix 21
21
D
784 786Right-handed 310
Helix 22
22
D
787 797Right-handed alpha
Helix 23
23
D
802 815Right-handed alpha
Helix 24
24
D
816 819Right-handed 310
Helix 25
25
D
820 822Right-handed 310
Helix 26
26
D
823 835Right-handed alpha
Helix 27
27
D
838 860Right-handed alpha
Helix 28
28
D
861 863Right-handed 310
Helix 29
29
D
864 881Right-handed alpha
Helix 30
30
D
885 899Right-handed alpha
Helix 31
31
D
916 930Right-handed alpha
Helix 32
32
D
931 933Right-handed 310
Helix 33
33
D
935 958Right-handed alpha
Helix 34
34
D
969 984Right-handed alpha
Helix 35
35
D
992 1012Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1UW4. Click on sheet of interest to get list of strands forming it: AA, AB, CA, CB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 84first strand
Strand 2
A
95 101anti-parallel
Strand 3
A
52 58anti-parallel
Strand 4
A
130 133anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
126 128anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 83first strand
Strand 2
C
95 101anti-parallel
Strand 3
C
52 58anti-parallel
Strand 4
C
130 133anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 120first strand
Strand 2
C
126 128anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il