Analysis of interatomic Contacts of Structural Units in PDB entry:
1UWC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UWC entry

There are 2 chains in PDB entry 1UWC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1VAL 261
B
 ALA 1VAL 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 1UWC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 24Right-handed alpha
Helix 2
2
A
70 78Right-handed alpha
Helix 3
3
A
98 122Right-handed alpha
Helix 4
4
A
133 148Right-handed alpha
Helix 5
5
A
165 176Right-handed alpha
Helix 6
6
A
195 199Right-handed 310
Helix 7
7
A
201 205Right-handed 310
Helix 8
8
A
220 222Right-handed 310
Helix 9
9
A
233 239Right-handed alpha
Helix 10
10
A
244 248Right-handed alpha
Helix 11
11
B
7 24Right-handed alpha
Helix 12
12
B
25 27Right-handed 310
Helix 13
13
B
70 78Right-handed alpha
Helix 14
14
B
98 122Right-handed alpha
Helix 15
15
B
133 148Right-handed alpha
Helix 16
16
B
165 176Right-handed alpha
Helix 17
17
B
195 199Right-handed 310
Helix 18
18
B
201 205Right-handed 310
Helix 19
19
B
233 239Right-handed 310
Helix 20
20
B
244 248Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 1UWC. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
224 227anti-parallel
Strand 3
A
211 215anti-parallel
Strand 4
A
186 191parallel
Strand 5
A
153 158parallel
Strand 6
A
126 132parallel
Strand 7
A
60 65parallel
Strand 8
A
48 55anti-parallel
Strand 9
A
35 43anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
95 97anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 250first strand
Strand 2
A
253 254anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 4first strand
Strand 2
B
224 227anti-parallel
Strand 3
B
211 215anti-parallel
Strand 4
B
186 191parallel
Strand 5
B
153 158parallel
Strand 6
B
126 132parallel
Strand 7
B
60 65parallel
Strand 8
B
48 55anti-parallel
Strand 9
B
36 43anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 84first strand
Strand 2
B
95 97anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 250first strand
Strand 2
B
253 254anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il