Analysis of interatomic Contacts of Structural Units in PDB entry:
1UXM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UXM entry

There are 12 chains in PDB entry 1UXM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLN 153
B
 ALA 1GLN 153
C
 ALA 1GLN 153
D
 ALA 1GLN 153
E
 ALA 1GLN 153
F
 ALA 1GLN 153
G
 ALA 1GLN 153
H
 ALA 1GLN 153
I
 ALA 1GLN 153
J
 ALA 1GLN 153
K
 ALA 1GLN 153
L
 ALA 1GLN 153
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 1UXM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
57 61Right-handed 310
Helix 2
2
A
133 138Right-handed alpha
Helix 3
3
B
57 61Right-handed 310
Helix 4
4
B
107 110Right-handed 310
Helix 5
5
B
133 138Right-handed alpha
Helix 6
6
C
55 61Right-handed 310
Helix 7
7
C
133 138Right-handed alpha
Helix 8
8
D
57 61Right-handed 310
Helix 9
9
D
107 110Right-handed 310
Helix 10
10
D
133 138Right-handed alpha
Helix 11
11
E
55 61Right-handed 310
Helix 12
12
E
107 110Right-handed 310
Helix 13
13
E
133 138Right-handed alpha
Helix 14
14
F
55 61Right-handed 310
Helix 15
15
F
107 110Right-handed 310
Helix 16
16
F
133 138Right-handed alpha
Helix 17
17
G
55 61Right-handed 310
Helix 18
18
G
133 138Right-handed alpha
Helix 19
19
H
57 61Right-handed 310
Helix 20
20
H
133 138Right-handed alpha
Helix 21
21
I
55 61Right-handed 310
Helix 22
22
I
107 110Right-handed 310
Helix 23
23
J
55 61Right-handed 310
Helix 24
24
K
55 61Right-handed 310
Helix 25
25
K
107 110Right-handed 310
Helix 26
26
K
131 138Right-handed alpha
Helix 27
27
L
57 61Right-handed 310
Helix 28
28
L
107 110Right-handed 310
Helix 29
29
L
133 138Right-handed alpha
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There are 17 sheets in PDB entry 1UXM. Click on sheet of interest to get list of strands forming it: AA, BA, BB, CA, CB, A, EA, EB, FA, FB, GA, HA, IA, IB, JA, KA, LA,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 8first strand
Strand 2
A
15 22anti-parallel
Strand 3
A
29 36anti-parallel
Strand 4
A
95 101anti-parallel
Strand 5
A
83 89anti-parallel
Strand 6
A
41 48anti-parallel
Strand 7
A
116 120anti-parallel
Strand 8
A
143 151anti-parallel
Strand 9
A
3 8anti-parallel
Strand 10
A
3 8first strand
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 101first strand
Strand 2
B
29 36anti-parallel
Strand 3
B
15 21anti-parallel
Strand 4
B
3 8anti-parallel
Strand 5
B
150 151anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 89first strand
Strand 2
B
41 48anti-parallel
Strand 3
B
116 120anti-parallel
Strand 4
B
143 148anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 101first strand
Strand 2
C
29 36anti-parallel
Strand 3
C
15 22anti-parallel
Strand 4
C
3 8anti-parallel
Strand 5
C
150 151anti-parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
83 89first strand
Strand 2
C
41 48anti-parallel
Strand 3
C
116 120anti-parallel
Strand 4
C
143 148anti-parallel
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There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 9first strand
Strand 2
D
15 22anti-parallel
Strand 3
D
29 36anti-parallel
Strand 4
D
95 101anti-parallel
Strand 5
D
83 89anti-parallel
Strand 6
D
41 48anti-parallel
Strand 7
D
116 120anti-parallel
Strand 8
D
143 151anti-parallel
Strand 9
D
3 9anti-parallel
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There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
95 101first strand
Strand 2
E
29 36anti-parallel
Strand 3
E
15 21anti-parallel
Strand 4
E
3 8anti-parallel
Strand 5
E
150 151anti-parallel
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There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
83 89first strand
Strand 2
E
41 48anti-parallel
Strand 3
E
116 120anti-parallel
Strand 4
E
143 148anti-parallel
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There are 5 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
95 101first strand
Strand 2
F
29 36anti-parallel
Strand 3
F
15 22anti-parallel
Strand 4
F
3 8anti-parallel
Strand 5
F
150 151anti-parallel
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There are 4 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
83 89first strand
Strand 2
F
41 48anti-parallel
Strand 3
F
116 120anti-parallel
Strand 4
F
143 148anti-parallel
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There are 24 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
3 8first strand
Strand 2
G
15 21anti-parallel
Strand 3
G
29 36anti-parallel
Strand 4
G
94 95anti-parallel
Strand 5
G
83 89first strand
Strand 6
G
41 48anti-parallel
Strand 7
G
116 120anti-parallel
Strand 8
G
143 151anti-parallel
Strand 9
G
15 21first strand
Strand 10
G
3 8anti-parallel
Strand 11
G
29 36first strand
Strand 12
G
15 21anti-parallel
Strand 13
G
41 48first strand
Strand 14
G
83 89anti-parallel
Strand 15
G
83 89first strand
Strand 16
G
41 48anti-parallel
Strand 17
G
94 95first strand
Strand 18
G
29 36anti-parallel
Strand 19
G
98 101anti-parallel
Strand 20
G
29 36parallel
Strand 21
G
116 120first strand
Strand 22
G
41 48anti-parallel
Strand 23
G
143 151first strand
Strand 24
G
3 8anti-parallel
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There are 16 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 9first strand
Strand 2
H
15 21anti-parallel
Strand 3
H
15 21first strand
Strand 4
H
3 9anti-parallel
Strand 5
H
29 36first strand
Strand 6
H
15 21anti-parallel
Strand 7
H
41 48first strand
Strand 8
H
83 89anti-parallel
Strand 9
H
83 89first strand
Strand 10
H
41 48anti-parallel
Strand 11
H
94 101first strand
Strand 12
H
29 36anti-parallel
Strand 13
H
116 120first strand
Strand 14
H
41 48anti-parallel
Strand 15
H
143 150first strand
Strand 16
H
3 9anti-parallel
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There are 5 strands in IA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
95 101first strand
Strand 2
I
29 36anti-parallel
Strand 3
I
15 22anti-parallel
Strand 4
I
3 8anti-parallel
Strand 5
I
150 151anti-parallel
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There are 4 strands in IB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
83 89first strand
Strand 2
I
41 48anti-parallel
Strand 3
I
116 120anti-parallel
Strand 4
I
143 148anti-parallel
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There are 8 strands in JA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
83 89first strand
Strand 2
J
41 48anti-parallel
Strand 3
J
116 120anti-parallel
Strand 4
J
143 151anti-parallel
Strand 5
J
3 10anti-parallel
Strand 6
J
15 22anti-parallel
Strand 7
J
29 36anti-parallel
Strand 8
J
95 101anti-parallel
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There are 16 strands in KA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
3 8first strand
Strand 2
K
15 22anti-parallel
Strand 3
K
15 22first strand
Strand 4
K
3 8anti-parallel
Strand 5
K
29 36first strand
Strand 6
K
15 22anti-parallel
Strand 7
K
41 48first strand
Strand 8
K
83 89anti-parallel
Strand 9
K
83 89first strand
Strand 10
K
41 48anti-parallel
Strand 11
K
94 101first strand
Strand 12
K
29 36anti-parallel
Strand 13
K
116 120first strand
Strand 14
K
41 48anti-parallel
Strand 15
K
143 151first strand
Strand 16
K
3 8anti-parallel
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There are 16 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
3 8first strand
Strand 2
L
15 21anti-parallel
Strand 3
L
15 21first strand
Strand 4
L
3 8anti-parallel
Strand 5
L
29 36first strand
Strand 6
L
15 21anti-parallel
Strand 7
L
41 48first strand
Strand 8
L
83 89anti-parallel
Strand 9
L
83 89first strand
Strand 10
L
41 48anti-parallel
Strand 11
L
95 101first strand
Strand 12
L
29 36anti-parallel
Strand 13
L
116 120first strand
Strand 14
L
41 48anti-parallel
Strand 15
L
143 151first strand
Strand 16
L
3 8anti-parallel
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