Analysis of interatomic Contacts of Structural Units in PDB entry:
1UYQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UYQ entry

There is 1 chain in PDB entry 1UYQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ARG 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1UYQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 22Right-handed alpha
Helix 2
AA2
A
26 30Right-handed 310
Helix 3
AA3
A
33 40Right-handed alpha
Helix 4
AA4
A
45 49Right-handed 310
Helix 5
AA5
A
56 70Right-handed alpha
Helix 6
AA6
A
81 86Right-handed alpha
Helix 7
AA7
A
94 111Right-handed alpha
Helix 8
AA8
A
125 130Right-handed alpha
Helix 9
AA9
A
137 154Right-handed alpha
Helix 10
AB1
A
166 176Right-handed alpha
Helix 11
AB2
A
186 212Right-handed alpha
Helix 12
AB3
A
232 247Right-handed alpha
Helix 13
AB4
A
247 257Right-handed alpha
Helix 14
AB5
A
260 270Right-handed alpha
Helix 15
AB6
A
279 285Right-handed alpha
Helix 16
AB7
A
330 340Right-handed alpha
Helix 17
AB8
A
341 344Right-handed 310
Helix 18
AB9
A
368 388Right-handed alpha
Helix 19
AC1
A
405 412Right-handed 310
Helix 20
AC2
A
429 442Right-handed alpha
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There are 4 sheets in PDB entry 1UYQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
443 445anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 15first strand
Strand 2
A
75 79parallel
Strand 3
A
114 120parallel
Strand 4
A
160 165parallel
Strand 5
A
216 220parallel
Strand 6
A
290 294parallel
Strand 7
A
348 353parallel
Strand 8
A
392 398parallel
Strand 9
A
11 15parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 228first strand
Strand 2
A
299 303parallel
Strand 3
A
312 314anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 419first strand
Strand 2
A
426 428anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il