Analysis of interatomic Contacts of Structural Units in PDB entry:
1V00


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V00 entry

There are 4 chains in PDB entry 1V00 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1THR 240
B
 VAL 1THR 240
C
 VAL 1ASN 241
D
 VAL 1THR 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1V00. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
105 109Right-handed 310
Helix 2
2
A
118 122Right-handed 310
Helix 3
3
A
199 204Right-handed alpha
Helix 4
4
B
105 109Right-handed 310
Helix 5
5
B
118 122Right-handed 310
Helix 6
6
B
199 204Right-handed alpha
Helix 7
7
C
105 109Right-handed 310
Helix 8
8
C
118 122Right-handed 310
Helix 9
9
C
199 204Right-handed alpha
Helix 10
10
D
105 109Right-handed 310
Helix 11
11
D
118 122Right-handed 310
Helix 12
12
D
199 204Right-handed alpha
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There are 11 sheets in PDB entry 1V00. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, CA, CB, DA, DB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
227 237anti-parallel
Strand 3
A
32 33anti-parallel
Strand 4
A
25 26anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
227 237anti-parallel
Strand 3
A
69 77anti-parallel
Strand 4
A
165 173anti-parallel
Strand 5
A
178 184anti-parallel
Strand 6
A
191 197anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 22first strand
Strand 2
A
48 53anti-parallel
Strand 3
A
207 216anti-parallel
Strand 4
A
57 58anti-parallel
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There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 22first strand
Strand 2
A
48 53anti-parallel
Strand 3
A
207 216anti-parallel
Strand 4
A
89 96anti-parallel
Strand 5
A
124 129anti-parallel
Strand 6
A
142 147anti-parallel
Strand 7
A
154 157anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 8first strand
Strand 2
B
227 237anti-parallel
Strand 3
B
32 33anti-parallel
Strand 4
B
25 26anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 8first strand
Strand 2
B
227 237anti-parallel
Strand 3
B
69 77anti-parallel
Strand 4
B
165 173anti-parallel
Strand 5
B
178 184anti-parallel
Strand 6
B
191 197anti-parallel
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There are 10 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 22first strand
Strand 2
B
48 53anti-parallel
Strand 3
B
207 216anti-parallel
Strand 4
B
57 58anti-parallel
Strand 5
B
207 216anti-parallel
Strand 6
B
154 157first strand
Strand 7
B
142 147anti-parallel
Strand 8
B
124 129anti-parallel
Strand 9
B
89 96anti-parallel
Strand 10
B
207 216anti-parallel
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There are 10 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 8first strand
Strand 2
C
227 237anti-parallel
Strand 3
C
25 26first strand
Strand 4
C
32 33anti-parallel
Strand 5
C
227 237anti-parallel
Strand 6
C
191 197first strand
Strand 7
C
178 184anti-parallel
Strand 8
C
165 173anti-parallel
Strand 9
C
69 77anti-parallel
Strand 10
C
227 237anti-parallel
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There are 10 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 22first strand
Strand 2
C
48 53anti-parallel
Strand 3
C
207 216anti-parallel
Strand 4
C
57 58anti-parallel
Strand 5
C
207 216anti-parallel
Strand 6
C
154 157first strand
Strand 7
C
142 147anti-parallel
Strand 8
C
124 129anti-parallel
Strand 9
C
89 96anti-parallel
Strand 10
C
207 216anti-parallel
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There are 10 strands in DA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 8first strand
Strand 2
D
227 237anti-parallel
Strand 3
D
25 26first strand
Strand 4
D
32 33anti-parallel
Strand 5
D
227 237anti-parallel
Strand 6
D
191 197first strand
Strand 7
D
178 184anti-parallel
Strand 8
D
165 173anti-parallel
Strand 9
D
69 77anti-parallel
Strand 10
D
227 237anti-parallel
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There are 10 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
18 22first strand
Strand 2
D
48 53anti-parallel
Strand 3
D
207 216anti-parallel
Strand 4
D
57 58anti-parallel
Strand 5
D
207 216anti-parallel
Strand 6
D
154 157first strand
Strand 7
D
142 147anti-parallel
Strand 8
D
124 129anti-parallel
Strand 9
D
89 96anti-parallel
Strand 10
D
207 216anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il