Analysis of interatomic Contacts of Structural Units in PDB entry:
1V0I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V0I entry

There is 1 chain in PDB entry 1V0I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 439
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1V0I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 11Right-handed 310
Helix 2
2
A
99 103Right-handed 310
Helix 3
3
A
149 156Right-handed alpha
Helix 4
4
A
173 185Right-handed alpha
Helix 5
5
A
198 213Right-handed alpha
Helix 6
6
A
214 216Right-handed 310
Helix 7
7
A
228 250Right-handed alpha
Helix 8
8
A
259 275Right-handed alpha
Helix 9
9
A
279 283Right-handed 310
Helix 10
10
A
286 297Right-handed alpha
Helix 11
11
A
323 331Right-handed alpha
Helix 12
12
A
338 345Right-handed alpha
Helix 13
13
A
365 377Right-handed alpha
Helix 14
14
A
381 390Right-handed alpha
Helix 15
15
A
397 408Right-handed alpha
Helix 16
16
A
416 434Right-handed alpha
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There are 4 sheets in PDB entry 1V0I. Click on sheet of interest to get list of strands forming it: BA, AB, AC, AD,

There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 30first strand
Strand 2
A
86 91anti-parallel
Strand 3
A
48 52anti-parallel
Strand 4
A
61 65anti-parallel
Strand 5
A
70 73anti-parallel
Strand 6
A
33 36anti-parallel
Strand 7
A
24 30anti-parallel
Strand 8
A
24 30first strand
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 98first strand
Strand 2
A
124 127anti-parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 108first strand
Strand 2
A
218 223parallel
Strand 3
A
189 195parallel
Strand 4
A
252 258parallel
Strand 5
A
305 314parallel
Strand 6
A
165 169parallel
Strand 7
A
334 336parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
158 159anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il