Analysis of interatomic Contacts of Structural Units in PDB entry:
1V0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V0J entry

There are 4 chains in PDB entry 1V0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 4LEU 395
B
 MET 4LEU 395
C
 MET 4LEU 395
D
 MET 4LEU 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 1V0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 30Right-handed alpha
Helix 2
2
A
44 47Right-handed 310
Helix 3
3
A
71 79Right-handed alpha
Helix 4
4
A
105 114Right-handed alpha
Helix 5
5
A
118 130Right-handed alpha
Helix 6
6
A
131 133Right-handed 310
Helix 7
7
A
143 150Right-handed alpha
Helix 8
8
A
150 158Right-handed alpha
Helix 9
9
A
158 167Right-handed alpha
Helix 10
10
A
169 173Right-handed 310
Helix 11
11
A
174 178Right-handed 310
Helix 12
12
A
202 212Right-handed alpha
Helix 13
13
A
224 233Right-handed alpha
Helix 14
14
A
246 251Right-handed alpha
Helix 15
15
A
297 300Right-handed 310
Helix 16
16
A
332 354Right-handed alpha
Helix 17
17
A
358 364Right-handed alpha
Helix 18
18
A
368 383Right-handed alpha
Helix 19
19
A
383 391Right-handed alpha
Helix 20
20
B
16 31Right-handed alpha
Helix 21
21
B
44 47Right-handed 310
Helix 22
22
B
71 79Right-handed alpha
Helix 23
23
B
105 114Right-handed alpha
Helix 24
24
B
118 130Right-handed alpha
Helix 25
25
B
131 133Right-handed 310
Helix 26
26
B
145 150Right-handed alpha
Helix 27
27
B
150 158Right-handed alpha
Helix 28
28
B
158 167Right-handed alpha
Helix 29
29
B
169 173Right-handed 310
Helix 30
30
B
174 178Right-handed 310
Helix 31
31
B
203 212Right-handed alpha
Helix 32
32
B
224 233Right-handed alpha
Helix 33
33
B
234 236Right-handed 310
Helix 34
34
B
246 251Right-handed alpha
Helix 35
35
B
297 300Right-handed 310
Helix 36
36
B
332 354Right-handed alpha
Helix 37
37
B
368 383Right-handed alpha
Helix 38
38
B
383 391Right-handed alpha
Helix 39
39
C
16 30Right-handed alpha
Helix 40
40
C
44 47Right-handed 310
Helix 41
41
C
71 79Right-handed alpha
Helix 42
42
C
105 113Right-handed alpha
Helix 43
43
C
118 131Right-handed alpha
Helix 44
44
C
143 150Right-handed alpha
Helix 45
45
C
150 158Right-handed alpha
Helix 46
46
C
158 167Right-handed alpha
Helix 47
47
C
169 173Right-handed 310
Helix 48
48
C
174 178Right-handed 310
Helix 49
49
C
202 213Right-handed alpha
Helix 50
50
C
224 233Right-handed alpha
Helix 51
51
C
234 236Right-handed 310
Helix 52
52
C
246 251Right-handed alpha
Helix 53
53
C
297 300Right-handed 310
Helix 54
54
C
332 354Right-handed alpha
Helix 55
55
C
358 364Right-handed alpha
Helix 56
56
C
368 383Right-handed alpha
Helix 57
57
C
383 390Right-handed alpha
Helix 58
58
D
16 30Right-handed alpha
Helix 59
59
D
44 47Right-handed 310
Helix 60
60
D
71 79Right-handed alpha
Helix 61
61
D
105 114Right-handed alpha
Helix 62
62
D
118 131Right-handed alpha
Helix 63
63
D
145 150Right-handed alpha
Helix 64
64
D
150 158Right-handed alpha
Helix 65
65
D
158 167Right-handed alpha
Helix 66
66
D
169 173Right-handed 310
Helix 67
67
D
174 178Right-handed 310
Helix 68
68
D
203 213Right-handed alpha
Helix 69
69
D
224 233Right-handed alpha
Helix 70
70
D
234 236Right-handed 310
Helix 71
71
D
246 251Right-handed alpha
Helix 72
72
D
297 300Right-handed 310
Helix 73
73
D
332 354Right-handed alpha
Helix 74
74
D
358 364Right-handed alpha
Helix 75
75
D
368 383Right-handed alpha
Helix 76
76
D
383 389Right-handed alpha
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There are 16 sheets in PDB entry 1V0J. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 220first strand
Strand 2
A
34 37parallel
Strand 3
A
10 13parallel
Strand 4
A
241 243parallel
Strand 5
A
355 357parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
58 60anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 69first strand
Strand 2
A
196 198anti-parallel
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There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 102first strand
Strand 2
A
91 95anti-parallel
Strand 3
A
280 283parallel
Strand 4
A
292 295anti-parallel
Strand 5
A
310 319anti-parallel
Strand 6
A
260 270anti-parallel
Strand 7
A
328 329anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 220first strand
Strand 2
B
34 37parallel
Strand 3
B
10 13parallel
Strand 4
B
241 243parallel
Strand 5
B
355 357parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 51first strand
Strand 2
B
58 60anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 69first strand
Strand 2
B
196 198anti-parallel
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There are 7 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 102first strand
Strand 2
B
91 95anti-parallel
Strand 3
B
280 283parallel
Strand 4
B
292 295anti-parallel
Strand 5
B
310 319anti-parallel
Strand 6
B
260 270anti-parallel
Strand 7
B
328 329anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
217 220first strand
Strand 2
C
34 37parallel
Strand 3
C
10 13parallel
Strand 4
C
241 243parallel
Strand 5
C
355 357parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 51first strand
Strand 2
C
58 60anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
67 69first strand
Strand 2
C
196 198anti-parallel
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There are 7 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
98 102first strand
Strand 2
C
91 95anti-parallel
Strand 3
C
280 283parallel
Strand 4
C
292 295anti-parallel
Strand 5
C
310 319anti-parallel
Strand 6
C
260 270anti-parallel
Strand 7
C
328 329anti-parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
217 220first strand
Strand 2
D
34 37parallel
Strand 3
D
10 13parallel
Strand 4
D
241 243parallel
Strand 5
D
355 357parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
49 51first strand
Strand 2
D
58 60anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
67 69first strand
Strand 2
D
196 198anti-parallel
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There are 7 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
98 102first strand
Strand 2
D
91 95anti-parallel
Strand 3
D
280 283parallel
Strand 4
D
292 295anti-parallel
Strand 5
D
310 319anti-parallel
Strand 6
D
260 270anti-parallel
Strand 7
D
328 329anti-parallel
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