Analysis of interatomic Contacts of Structural Units in PDB entry:
1V0O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V0O entry

There are 2 chains in PDB entry 1V0O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3ASN 287
B
 LYS 3ASN 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1V0O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 57Right-handed alpha
Helix 2
2
A
86 93Right-handed alpha
Helix 3
3
A
98 119Right-handed alpha
Helix 4
4
A
127 129Right-handed 310
Helix 5
5
A
168 173Right-handed alpha
Helix 6
6
A
180 197Right-handed alpha
Helix 7
7
A
205 218Right-handed alpha
Helix 8
8
A
227 231Right-handed 310
Helix 9
9
A
245 249Right-handed 310
Helix 10
10
A
254 265Right-handed alpha
Helix 11
11
A
268 272Right-handed 310
Helix 12
12
A
274 280Right-handed alpha
Helix 13
13
B
47 57Right-handed alpha
Helix 14
14
B
86 92Right-handed alpha
Helix 15
15
B
98 119Right-handed alpha
Helix 16
16
B
127 129Right-handed 310
Helix 17
17
B
168 173Right-handed alpha
Helix 18
18
B
180 197Right-handed alpha
Helix 19
19
B
205 218Right-handed alpha
Helix 20
20
B
227 231Right-handed 310
Helix 21
21
B
245 250Right-handed alpha
Helix 22
22
B
254 265Right-handed alpha
Helix 23
23
B
268 272Right-handed 310
Helix 24
24
B
274 280Right-handed alpha
Helix 25
25
B
281 286Right-handed alpha
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There are 6 sheets in PDB entry 1V0O. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 13first strand
Strand 2
A
16 22anti-parallel
Strand 3
A
28 34anti-parallel
Strand 4
A
75 79anti-parallel
Strand 5
A
65 70anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
131 133anti-parallel
Strand 3
A
139 141anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
148 149anti-parallel
Strand 3
A
152 153anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 12first strand
Strand 2
B
16 22anti-parallel
Strand 3
B
28 34anti-parallel
Strand 4
B
75 79anti-parallel
Strand 5
B
65 70anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 85first strand
Strand 2
B
131 133anti-parallel
Strand 3
B
139 141anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 122first strand
Strand 2
B
148 149anti-parallel
Strand 3
B
152 153anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il