Analysis of interatomic Contacts of Structural Units in PDB entry:
1V0Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1V0Z entry

There are 4 chains in PDB entry 1V0Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 88	GLU 476
B	ARG 88	GLU 476
C	ARG 88	GLU 476
D	ARG 88	GLU 476

There are 14 helices in PDB entry 1V0Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	110	116	Right-handed alpha
Helix 2	2	A	148	152	Right-handed 310
Helix 3	3	A	204	207	Right-handed 310
Helix 4	4	A	471	476	Right-handed 310
Helix 5	5	B	110	116	Right-handed alpha
Helix 6	6	B	148	152	Right-handed 310
Helix 7	7	B	204	207	Right-handed 310
Helix 8	8	B	471	476	Right-handed 310
Helix 9	9	C	110	116	Right-handed alpha
Helix 10	10	C	148	152	Right-handed 310
Helix 11	11	C	471	476	Right-handed 310
Helix 12	12	D	110	116	Right-handed alpha
Helix 13	13	D	148	152	Right-handed 310
Helix 14	14	D	471	476	Right-handed 310

There are 24 sheets in PDB entry 1V0Z. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF, CA, CB, CC, CD, CE, CF, A, DB, C, DD, DE, DF,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	108	first strand
Strand 2	A	447	457	anti-parallel
Strand 3	A	428	437	anti-parallel
Strand 4	A	413	417	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	131	first strand
Strand 2	A	134	145	anti-parallel
Strand 3	A	163	168	anti-parallel
Strand 4	A	179	183	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	191	first strand
Strand 2	A	196	202	anti-parallel
Strand 3	A	209	214	anti-parallel
Strand 4	A	217	223	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	250	first strand
Strand 2	A	258	265	anti-parallel
Strand 3	A	268	274	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	290	first strand
Strand 2	A	293	299	anti-parallel
Strand 3	A	308	313	anti-parallel
Strand 4	A	318	323	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	361	first strand
Strand 2	A	368	371	anti-parallel
Strand 3	A	379	385	anti-parallel
Strand 4	A	399	409	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	108	first strand
Strand 2	B	447	457	anti-parallel
Strand 3	B	428	437	anti-parallel
Strand 4	B	413	417	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	130	first strand
Strand 2	B	135	145	anti-parallel
Strand 3	B	163	168	anti-parallel
Strand 4	B	179	183	anti-parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	191	first strand
Strand 2	B	196	202	anti-parallel
Strand 3	B	209	214	anti-parallel
Strand 4	B	217	223	anti-parallel

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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	250	first strand
Strand 2	B	258	265	anti-parallel
Strand 3	B	268	274	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	290	first strand
Strand 2	B	293	299	anti-parallel
Strand 3	B	308	313	anti-parallel
Strand 4	B	318	323	anti-parallel

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There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	361	first strand
Strand 2	B	368	371	anti-parallel
Strand 3	B	379	385	anti-parallel
Strand 4	B	399	409	anti-parallel

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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	108	first strand
Strand 2	C	447	457	anti-parallel
Strand 3	C	428	437	anti-parallel
Strand 4	C	413	417	anti-parallel

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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	131	first strand
Strand 2	C	134	145	anti-parallel
Strand 3	C	163	168	anti-parallel
Strand 4	C	179	183	anti-parallel

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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	191	first strand
Strand 2	C	196	202	anti-parallel
Strand 3	C	209	214	anti-parallel
Strand 4	C	217	223	anti-parallel

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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	250	first strand
Strand 2	C	258	265	anti-parallel
Strand 3	C	268	274	anti-parallel

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There are 4 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	290	first strand
Strand 2	C	293	299	anti-parallel
Strand 3	C	308	313	anti-parallel
Strand 4	C	318	323	anti-parallel

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There are 4 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	360	361	first strand
Strand 2	C	368	371	anti-parallel
Strand 3	C	379	385	anti-parallel
Strand 4	C	399	409	anti-parallel

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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	108	first strand
Strand 2	D	447	457	anti-parallel
Strand 3	D	428	437	anti-parallel
Strand 4	D	413	417	anti-parallel

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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	131	first strand
Strand 2	D	134	145	anti-parallel
Strand 3	D	163	168	anti-parallel
Strand 4	D	179	183	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	191	first strand
Strand 2	D	196	202	anti-parallel
Strand 3	D	209	214	anti-parallel
Strand 4	D	217	223	anti-parallel

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There are 3 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	250	first strand
Strand 2	D	258	265	anti-parallel
Strand 3	D	268	274	anti-parallel

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There are 4 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	290	first strand
Strand 2	D	293	299	anti-parallel
Strand 3	D	308	313	anti-parallel
Strand 4	D	318	323	anti-parallel

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There are 4 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	360	361	first strand
Strand 2	D	368	371	anti-parallel
Strand 3	D	379	385	anti-parallel
Strand 4	D	399	409	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1V0Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
1V0Z