Analysis of interatomic Contacts of Structural Units in PDB entry:
1V10


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V10 entry

There is 1 chain in PDB entry 1V10 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ASN 494
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1V10. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
73 77Right-handed 310
Helix 2
2
A
114 119Right-handed 310
Helix 3
3
A
133 137Right-handed 310
Helix 4
4
A
141 143Right-handed 310
Helix 5
5
A
184 188Right-handed 310
Helix 6
6
A
275 279Right-handed 310
Helix 7
7
A
305 309Right-handed 310
Helix 8
8
A
356 364Right-handed alpha
Helix 9
9
A
367 371Right-handed 310
Helix 10
10
A
454 459Right-handed alpha
Helix 11
11
A
472 477Right-handed alpha
Helix 12
12
A
480 485Right-handed alpha
Helix 13
13
A
485 491Right-handed alpha
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There are 7 sheets in PDB entry 1V10. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 27first strand
Strand 2
A
4 14anti-parallel
Strand 3
A
43 50parallel
Strand 4
A
91 98anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
121 127parallel
Strand 3
A
104 110anti-parallel
Strand 4
A
63 66anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 175first strand
Strand 2
A
145 151anti-parallel
Strand 3
A
200 207parallel
Strand 4
A
248 254anti-parallel
Strand 5
A
223 228anti-parallel
Strand 6
A
231 238anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 195first strand
Strand 2
A
281 286parallel
Strand 3
A
261 268anti-parallel
Strand 4
A
214 218anti-parallel
Strand 5
A
241 243anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 331first strand
Strand 2
A
385 391parallel
Strand 3
A
435 441anti-parallel
Strand 4
A
405 409anti-parallel
Strand 5
A
423 424anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 335first strand
Strand 2
A
344 345anti-parallel
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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 380first strand
Strand 2
A
463 468parallel
Strand 3
A
446 452anti-parallel
Strand 4
A
397 400anti-parallel
Strand 5
A
426 428anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il