Analysis of interatomic Contacts of Structural Units in PDB entry:
1V15


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V15 entry

There are 12 chains in PDB entry 1V15 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3HIS 131
B
 MET 1LYS 134
C
 SER 3HIS 131
D
 GLU 2LYS 134
E
 C 2 C 8
F
 G 9 C 16
G
 G 3 C 8
H
 G 9 C 16
I
 C 2 C 8
J
 G 9 C 16
K
 G 3 C 8
L
 G 9 C 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1V15. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 64Right-handed alpha
Helix 2
2
A
76 82Right-handed alpha
Helix 3
3
A
88 92Right-handed 310
Helix 4
4
A
123 131Right-handed alpha
Helix 5
5
B
19 28Right-handed 310
Helix 6
6
B
35 43Right-handed alpha
Helix 7
7
B
49 64Right-handed alpha
Helix 8
8
B
65 68Right-handed 310
Helix 9
9
B
72 81Right-handed alpha
Helix 10
10
B
88 92Right-handed 310
Helix 11
11
B
123 133Right-handed alpha
Helix 12
12
C
24 28Right-handed 310
Helix 13
13
C
35 43Right-handed alpha
Helix 14
14
C
49 64Right-handed alpha
Helix 15
15
C
65 68Right-handed 310
Helix 16
16
C
72 81Right-handed alpha
Helix 17
17
C
88 92Right-handed 310
Helix 18
18
C
123 131Right-handed alpha
Helix 19
19
D
21 28Right-handed 310
Helix 20
20
D
35 43Right-handed alpha
Helix 21
21
D
49 64Right-handed alpha
Helix 22
22
D
64 69Right-handed alpha
Helix 23
23
D
72 81Right-handed alpha
Helix 24
24
D
88 92Right-handed 310
Helix 25
25
D
123 133Right-handed alpha
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There are 7 sheets in PDB entry 1V15. Click on sheet of interest to get list of strands forming it: AA, BA, BB, CA, CB, A, DB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 103first strand
Strand 2
A
119 122anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
46 47anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
119 122anti-parallel
Strand 3
B
100 103anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 10first strand
Strand 2
C
46 47anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 103first strand
Strand 2
C
119 122anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 10first strand
Strand 2
D
46 47anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
100 103first strand
Strand 2
D
119 122anti-parallel
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