Analysis of interatomic Contacts of Structural Units in PDB entry:
1V1Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V1Q entry

There are 2 chains in PDB entry 1V1Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO -4ALA 107
B
 GLY -7LYS 105
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 1V1Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-4 1Right-handed 310
Helix 2
2
A
57 64Right-handed 310
Helix 3
3
B
-4 1Right-handed 310
Helix 4
4
B
60 64Right-handed 310
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There is 1 sheet ( AA) in PDB entry 1V1Q.

There are 12 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 19first strand
Strand 2
B
3 19anti-parallel
Strand 3
B
25 39anti-parallel
Strand 4
B
42 55anti-parallel
Strand 5
B
91 99parallel
Strand 6
B
71 79anti-parallel
Strand 7
B
3 19parallel
Strand 8
A
3 19anti-parallel
Strand 9
A
25 39parallel
Strand 10
A
42 55parallel
Strand 11
A
89 99parallel
Strand 12
A
3 19first strand
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