Analysis of interatomic Contacts of Structural Units in PDB entry:
1V1S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V1S entry

There are 6 chains in PDB entry 1V1S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1LYS 302
B
MET 1LYS 302
C
MET 1LYS 302
D
MET 1LYS 302
E
MET 1LYS 302
F
MET 1LYS 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 1V1S. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
21 25Right-handed 310
Helix 2
2
A
34 46Right-handed alpha
Helix 3
3
A
59 73Right-handed alpha
Helix 4
4
A
108 112Right-handed 310
Helix 5
5
A
119 124Right-handed 310
Helix 6
6
A
134 139Right-handed alpha
Helix 7
7
A
139 156Right-handed alpha
Helix 8
8
A
172 184Right-handed alpha
Helix 9
9
A
185 187Right-handed 310
Helix 10
10
A
194 202Right-handed alpha
Helix 11
11
A
203 211Right-handed alpha
Helix 12
12
A
248 263Right-handed alpha
Helix 13
13
A
266 283Right-handed alpha
Helix 14
14
A
293 300Right-handed alpha
Helix 15
15
B
21 25Right-handed 310
Helix 16
16
B
34 46Right-handed alpha
Helix 17
17
B
59 73Right-handed alpha
Helix 18
18
B
108 112Right-handed 310
Helix 19
19
B
119 124Right-handed 310
Helix 20
20
B
134 139Right-handed alpha
Helix 21
21
B
139 156Right-handed alpha
Helix 22
22
B
172 184Right-handed alpha
Helix 23
23
B
185 187Right-handed 310
Helix 24
24
B
194 202Right-handed alpha
Helix 25
25
B
203 211Right-handed alpha
Helix 26
26
B
248 263Right-handed alpha
Helix 27
27
B
266 283Right-handed alpha
Helix 28
28
B
293 300Right-handed alpha
Helix 29
29
C
21 25Right-handed 310
Helix 30
30
C
34 46Right-handed alpha
Helix 31
31
C
59 73Right-handed alpha
Helix 32
32
C
108 112Right-handed 310
Helix 33
33
C
119 124Right-handed 310
Helix 34
34
C
134 139Right-handed alpha
Helix 35
35
C
139 155Right-handed alpha
Helix 36
36
C
172 184Right-handed alpha
Helix 37
37
C
185 187Right-handed 310
Helix 38
38
C
194 202Right-handed alpha
Helix 39
39
C
203 211Right-handed alpha
Helix 40
40
C
248 263Right-handed alpha
Helix 41
41
C
266 283Right-handed alpha
Helix 42
42
C
293 301Right-handed alpha
Helix 43
43
D
21 25Right-handed 310
Helix 44
44
D
34 46Right-handed alpha
Helix 45
45
D
59 73Right-handed alpha
Helix 46
46
D
108 112Right-handed 310
Helix 47
47
D
119 124Right-handed 310
Helix 48
48
D
134 139Right-handed alpha
Helix 49
49
D
139 156Right-handed alpha
Helix 50
50
D
172 184Right-handed alpha
Helix 51
51
D
185 187Right-handed 310
Helix 52
52
D
194 202Right-handed alpha
Helix 53
53
D
203 211Right-handed alpha
Helix 54
54
D
248 263Right-handed alpha
Helix 55
55
D
266 283Right-handed alpha
Helix 56
56
D
293 301Right-handed alpha
Helix 57
57
E
21 25Right-handed 310
Helix 58
58
E
34 46Right-handed alpha
Helix 59
59
E
59 73Right-handed alpha
Helix 60
60
E
108 112Right-handed 310
Helix 61
61
E
119 124Right-handed 310
Helix 62
62
E
134 139Right-handed alpha
Helix 63
63
E
139 156Right-handed alpha
Helix 64
64
E
172 184Right-handed alpha
Helix 65
65
E
185 187Right-handed 310
Helix 66
66
E
194 202Right-handed alpha
Helix 67
67
E
203 211Right-handed alpha
Helix 68
68
E
248 263Right-handed alpha
Helix 69
69
E
266 283Right-handed alpha
Helix 70
70
E
293 300Right-handed alpha
Helix 71
71
F
21 25Right-handed 310
Helix 72
72
F
34 46Right-handed alpha
Helix 73
73
F
59 73Right-handed alpha
Helix 74
74
F
108 112Right-handed 310
Helix 75
75
F
119 124Right-handed 310
Helix 76
76
F
134 139Right-handed alpha
Helix 77
77
F
139 155Right-handed alpha
Helix 78
78
F
172 184Right-handed alpha
Helix 79
79
F
185 187Right-handed 310
Helix 80
80
F
194 202Right-handed alpha
Helix 81
81
F
203 211Right-handed alpha
Helix 82
82
F
248 263Right-handed alpha
Helix 83
83
F
266 283Right-handed alpha
Helix 84
84
F
293 301Right-handed alpha
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There are 9 sheets in PDB entry 1V1S. Click on sheet of interest to get list of strands forming it: AA, AB, BA, CA, CB, A, EA, EB, FA,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
79 81first strand
Strand 2
A
50 56parallel
Strand 3
A
4 7parallel
Strand 4
A
128 132parallel
Strand 5
A
159 163parallel
Strand 6
A
189 193parallel
Strand 7
A
215 219parallel
Strand 8
A
225 229anti-parallel
Strand 9
A
232 235anti-parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
100 104first strand
Strand 2
A
88 92anti-parallel
Strand 3
A
11 16parallel
Strand 4
A
27 33anti-parallel
Strand 5
B
27 33anti-parallel
Strand 6
B
11 16anti-parallel
Strand 7
B
88 92parallel
Strand 8
B
100 104anti-parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
79 81first strand
Strand 2
B
50 56parallel
Strand 3
B
4 7parallel
Strand 4
B
128 132parallel
Strand 5
B
159 163parallel
Strand 6
B
189 193parallel
Strand 7
B
215 219parallel
Strand 8
B
225 229anti-parallel
Strand 9
B
232 235anti-parallel
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There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
79 81first strand
Strand 2
C
50 56parallel
Strand 3
C
4 7parallel
Strand 4
C
128 132parallel
Strand 5
C
159 163parallel
Strand 6
C
189 193parallel
Strand 7
C
215 219parallel
Strand 8
C
225 229anti-parallel
Strand 9
C
232 235anti-parallel
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There are 8 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
100 104first strand
Strand 2
C
88 92anti-parallel
Strand 3
C
11 16parallel
Strand 4
C
27 33anti-parallel
Strand 5
D
27 33anti-parallel
Strand 6
D
11 16anti-parallel
Strand 7
D
88 92parallel
Strand 8
D
100 104anti-parallel
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There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
79 81first strand
Strand 2
D
50 56parallel
Strand 3
D
4 7parallel
Strand 4
D
128 132parallel
Strand 5
D
159 163parallel
Strand 6
D
189 193parallel
Strand 7
D
215 219parallel
Strand 8
D
225 229anti-parallel
Strand 9
D
232 235anti-parallel
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There are 9 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
79 81first strand
Strand 2
E
50 56parallel
Strand 3
E
4 7parallel
Strand 4
E
128 132parallel
Strand 5
E
159 163parallel
Strand 6
E
189 193parallel
Strand 7
E
215 219parallel
Strand 8
E
225 229anti-parallel
Strand 9
E
232 235anti-parallel
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There are 8 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
100 104first strand
Strand 2
E
88 92anti-parallel
Strand 3
E
11 16parallel
Strand 4
E
27 33anti-parallel
Strand 5
F
27 33anti-parallel
Strand 6
F
11 16anti-parallel
Strand 7
F
88 92parallel
Strand 8
F
100 104anti-parallel
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There are 9 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
79 81first strand
Strand 2
F
50 56parallel
Strand 3
F
4 7parallel
Strand 4
F
128 132parallel
Strand 5
F
159 163parallel
Strand 6
F
189 193parallel
Strand 7
F
215 219parallel
Strand 8
F
225 229anti-parallel
Strand 9
F
232 235anti-parallel
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