Analysis of interatomic Contacts of Structural Units in PDB entry:
1V29


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V29 entry

There are 2 chains in PDB entry 1V29 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 15VAL 217
B
 MET 1HIS 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1V29. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 22Right-handed 310
Helix 2
2
A
25 43Right-handed alpha
Helix 3
3
A
47 60Right-handed alpha
Helix 4
4
A
64 75Right-handed alpha
Helix 5
5
A
77 87Right-handed alpha
Helix 6
6
A
87 96Right-handed alpha
Helix 7
7
A
127 132Right-handed alpha
Helix 8
8
A
136 139Right-handed 310
Helix 9
9
A
140 147Right-handed alpha
Helix 10
10
A
150 158Right-handed alpha
Helix 11
11
A
193 199Right-handed alpha
Helix 12
12
A
203 207Right-handed 310
Helix 13
13
B
29 45Right-handed alpha
Helix 14
14
B
52 61Right-handed alpha
Helix 15
15
B
63 70Right-handed alpha
Helix 16
16
B
71 87Right-handed alpha
Helix 17
17
B
91 105Right-handed alpha
Helix 18
18
B
115 129Right-handed alpha
Helix 19
19
B
162 166Right-handed 310
Helix 20
20
B
181 186Right-handed alpha
Helix 21
21
B
203 208Right-handed alpha
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There are 3 sheets in PDB entry 1V29. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
A
178 182parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 119first strand
Strand 2
A
167 172parallel
Strand 3
B
213 220parallel
Strand 4
B
194 202anti-parallel
Strand 5
B
169 179anti-parallel
Strand 6
B
133 134anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 119first strand
Strand 2
A
167 172parallel
Strand 3
B
213 220parallel
Strand 4
B
194 202anti-parallel
Strand 5
B
169 179anti-parallel
Strand 6
B
224 226anti-parallel
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