Analysis of interatomic Contacts of Structural Units in PDB entry:
1V2D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V2D entry

There is 1 chain in PDB entry 1V2D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1VAL 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1V2D. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
4 10Right-handed 310
Helix 2
2
A
14 26Right-handed alpha
Helix 3
3
A
40 51Right-handed alpha
Helix 4
4
A
63 75Right-handed alpha
Helix 5
5
A
77 79Right-handed 310
Helix 6
6
A
86 99Right-handed alpha
Helix 7
7
A
114 122Right-handed alpha
Helix 8
8
A
141 147Right-handed alpha
Helix 9
9
A
170 184Right-handed alpha
Helix 10
10
A
205 210Right-handed alpha
Helix 11
11
A
220 224Right-handed alpha
Helix 12
12
A
226 230Right-handed 310
Helix 13
13
A
240 252Right-handed alpha
Helix 14
14
A
256 273Right-handed alpha
Helix 15
15
A
274 297Right-handed alpha
Helix 16
16
A
318 326Right-handed alpha
Helix 17
17
A
334 337Right-handed 310
Helix 18
18
A
353 368Right-handed alpha
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There are 4 sheets in PDB entry 1V2D. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
28 29first strand
Strand 2
A
328 329parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
81 84first strand
Strand 2
A
232 235anti-parallel
Strand 3
A
214 219anti-parallel
Strand 4
A
187 191parallel
Strand 5
A
153 159parallel
Strand 6
A
104 109parallel
Strand 7
A
125 130parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
132 134first strand
Strand 2
A
137 139anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
301 302first strand
Strand 2
A
309 313anti-parallel
Strand 3
A
345 349anti-parallel
Strand 4
A
331 332anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il