Analysis of interatomic Contacts of Structural Units in PDB entry:
1V47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V47 entry

There are 2 chains in PDB entry 1V47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4VAL 349
B
 THR 4ARG 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1V47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 23Right-handed alpha
Helix 2
2
A
34 45Right-handed alpha
Helix 3
3
A
94 104Right-handed alpha
Helix 4
4
A
110 119Right-handed alpha
Helix 5
5
A
142 153Right-handed alpha
Helix 6
6
A
168 182Right-handed alpha
Helix 7
7
A
200 216Right-handed alpha
Helix 8
8
A
217 219Right-handed 310
Helix 9
9
A
234 248Right-handed alpha
Helix 10
10
A
269 274Right-handed alpha
Helix 11
11
A
275 278Right-handed 310
Helix 12
12
A
307 314Right-handed 310
Helix 13
13
A
318 328Right-handed alpha
Helix 14
14
A
338 340Right-handed 310
Helix 15
15
A
341 347Right-handed alpha
Helix 16
16
B
11 23Right-handed alpha
Helix 17
17
B
34 45Right-handed alpha
Helix 18
18
B
94 103Right-handed alpha
Helix 19
19
B
110 118Right-handed alpha
Helix 20
20
B
142 152Right-handed alpha
Helix 21
21
B
168 182Right-handed alpha
Helix 22
22
B
200 216Right-handed alpha
Helix 23
23
B
217 219Right-handed 310
Helix 24
24
B
234 248Right-handed alpha
Helix 25
25
B
269 274Right-handed alpha
Helix 26
26
B
275 278Right-handed 310
Helix 27
27
B
307 314Right-handed 310
Helix 28
28
B
318 324Right-handed alpha
Helix 29
29
B
338 340Right-handed 310
Helix 30
30
B
341 347Right-handed alpha
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There are 8 sheets in PDB entry 1V47. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
72 77parallel
Strand 3
A
80 86anti-parallel
Strand 4
A
128 130anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
122 125anti-parallel
Strand 3
A
89 92anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 223first strand
Strand 2
A
184 189parallel
Strand 3
A
158 163parallel
Strand 4
A
252 255parallel
Strand 5
A
284 287parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 302first strand
Strand 2
A
291 294anti-parallel
Strand 3
A
315 316anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 9first strand
Strand 2
B
72 76parallel
Strand 3
B
81 86anti-parallel
Strand 4
B
128 130anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 61first strand
Strand 2
B
122 125anti-parallel
Strand 3
B
89 92anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 223first strand
Strand 2
B
184 189parallel
Strand 3
B
158 163parallel
Strand 4
B
252 255parallel
Strand 5
B
284 287parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 302first strand
Strand 2
B
291 294anti-parallel
Strand 3
B
315 316anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il