Analysis of interatomic Contacts of Structural Units in PDB entry:
1V5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V5D entry

There are 2 chains in PDB entry 1V5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 49PRO 434
B
 ALA 49PRO 434
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 1V5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
71 90Right-handed alpha
Helix 2
2
A
121 134Right-handed alpha
Helix 3
3
A
140 155Right-handed alpha
Helix 4
4
A
171 175Right-handed 310
Helix 5
5
A
181 200Right-handed alpha
Helix 6
6
A
206 218Right-handed alpha
Helix 7
7
A
218 224Right-handed alpha
Helix 8
8
A
244 248Right-handed 310
Helix 9
9
A
249 261Right-handed alpha
Helix 10
10
A
263 284Right-handed alpha
Helix 11
11
A
305 309Right-handed 310
Helix 12
12
A
319 321Right-handed 310
Helix 13
13
A
322 335Right-handed alpha
Helix 14
14
A
336 355Right-handed alpha
Helix 15
15
A
357 361Right-handed 310
Helix 16
16
A
377 387Right-handed alpha
Helix 17
17
A
391 393Right-handed 310
Helix 18
18
A
394 406Right-handed alpha
Helix 19
19
A
411 426Right-handed alpha
Helix 20
20
B
71 90Right-handed alpha
Helix 21
21
B
121 134Right-handed alpha
Helix 22
22
B
140 155Right-handed alpha
Helix 23
23
B
171 175Right-handed 310
Helix 24
24
B
181 200Right-handed alpha
Helix 25
25
B
206 217Right-handed alpha
Helix 26
26
B
218 224Right-handed alpha
Helix 27
27
B
244 248Right-handed 310
Helix 28
28
B
249 261Right-handed alpha
Helix 29
29
B
263 284Right-handed alpha
Helix 30
30
B
305 309Right-handed 310
Helix 31
31
B
319 321Right-handed 310
Helix 32
32
B
322 335Right-handed alpha
Helix 33
33
B
336 354Right-handed alpha
Helix 34
34
B
357 361Right-handed 310
Helix 35
35
B
377 387Right-handed alpha
Helix 36
36
B
391 393Right-handed 310
Helix 37
37
B
394 406Right-handed alpha
Helix 38
38
B
411 426Right-handed alpha
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There are 6 sheets in PDB entry 1V5D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
103 104anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
167 168anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 295first strand
Strand 2
A
300 301anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 92first strand
Strand 2
B
103 104anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 120first strand
Strand 2
B
167 168anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 295first strand
Strand 2
B
300 301anti-parallel
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