Analysis of interatomic Contacts of Structural Units in PDB entry:
1V5V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V5V entry

There are 2 chains in PDB entry 1V5V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3THR 401
B
 GLN 3THR 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 1V5V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 18Right-handed alpha
Helix 2
2
A
35 46Right-handed alpha
Helix 3
3
A
64 73Right-handed alpha
Helix 4
4
A
119 136Right-handed alpha
Helix 5
5
A
160 170Right-handed alpha
Helix 6
6
A
172 176Right-handed 310
Helix 7
7
A
217 221Right-handed 310
Helix 8
8
A
224 239Right-handed alpha
Helix 9
9
A
240 242Right-handed 310
Helix 10
10
A
247 259Right-handed alpha
Helix 11
11
A
287 291Right-handed 310
Helix 12
12
A
299 310Right-handed alpha
Helix 13
13
A
363 365Right-handed 310
Helix 14
14
B
10 18Right-handed alpha
Helix 15
15
B
35 46Right-handed alpha
Helix 16
16
B
64 73Right-handed alpha
Helix 17
17
B
119 135Right-handed alpha
Helix 18
18
B
160 170Right-handed alpha
Helix 19
19
B
172 176Right-handed 310
Helix 20
20
B
217 221Right-handed 310
Helix 21
21
B
224 239Right-handed alpha
Helix 22
22
B
240 242Right-handed 310
Helix 23
23
B
247 259Right-handed alpha
Helix 24
24
B
287 291Right-handed 310
Helix 25
25
B
299 310Right-handed alpha
Helix 26
26
B
363 365Right-handed 310
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There are 8 sheets in PDB entry 1V5V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
27 32anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 186first strand
Strand 2
A
189 194anti-parallel
Strand 3
A
203 209anti-parallel
Strand 4
A
151 157anti-parallel
Strand 5
A
48 51anti-parallel
Strand 6
A
244 246parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 91first strand
Strand 2
A
97 107anti-parallel
Strand 3
A
110 115anti-parallel
Strand 4
A
56 61anti-parallel
Strand 5
A
143 146anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 320first strand
Strand 2
A
354 361anti-parallel
Strand 3
A
337 347anti-parallel
Strand 4
A
331 334anti-parallel
Strand 5
A
370 375anti-parallel
Strand 6
A
378 385anti-parallel
Strand 7
A
313 320anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 24first strand
Strand 2
B
27 32anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 186first strand
Strand 2
B
189 194anti-parallel
Strand 3
B
203 209anti-parallel
Strand 4
B
151 157anti-parallel
Strand 5
B
48 51anti-parallel
Strand 6
B
244 246parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 91first strand
Strand 2
B
97 105anti-parallel
Strand 3
B
110 115anti-parallel
Strand 4
B
56 61anti-parallel
Strand 5
B
143 146anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 320first strand
Strand 2
B
354 361anti-parallel
Strand 3
B
337 347anti-parallel
Strand 4
B
331 334anti-parallel
Strand 5
B
370 375anti-parallel
Strand 6
B
378 385anti-parallel
Strand 7
B
313 320anti-parallel
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