Analysis of interatomic Contacts of Structural Units in PDB entry:
1V5X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V5X entry

There are 2 chains in PDB entry 1V5X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 200
B
 MET 1ARG 200
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 1V5X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 21Right-handed alpha
Helix 2
2
A
38 49Right-handed alpha
Helix 3
3
A
63 74Right-handed alpha
Helix 4
4
A
86 94Right-handed alpha
Helix 5
5
A
110 116Right-handed 310
Helix 6
6
A
135 138Right-handed 310
Helix 7
7
A
139 145Right-handed alpha
Helix 8
8
A
159 167Right-handed alpha
Helix 9
9
A
174 176Right-handed 310
Helix 10
10
A
185 199Right-handed alpha
Helix 11
11
B
10 21Right-handed alpha
Helix 12
12
B
38 49Right-handed alpha
Helix 13
13
B
63 75Right-handed alpha
Helix 14
14
B
86 95Right-handed alpha
Helix 15
15
B
110 116Right-handed 310
Helix 16
16
B
135 138Right-handed 310
Helix 17
17
B
139 145Right-handed alpha
Helix 18
18
B
159 166Right-handed alpha
Helix 19
19
B
174 176Right-handed 310
Helix 20
20
B
185 198Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1V5X. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
24 28parallel
Strand 3
A
54 59parallel
Strand 4
A
78 81parallel
Strand 5
A
99 104parallel
Strand 6
A
120 124parallel
Strand 7
A
149 151parallel
Strand 8
A
170 173parallel
Strand 9
A
2 5parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 180first strand
Strand 2
A
183 184anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
24 28parallel
Strand 3
B
54 59parallel
Strand 4
B
78 81parallel
Strand 5
B
99 104parallel
Strand 6
B
120 124parallel
Strand 7
B
149 151parallel
Strand 8
B
170 173parallel
Strand 9
B
2 5parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 180first strand
Strand 2
B
183 184anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il