Analysis of interatomic Contacts of Structural Units in PDB entry:
1V5Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V5Z entry

There are 2 chains in PDB entry 1V5Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LEU 218
B
 THR 2LEU 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1V5Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 12Right-handed alpha
Helix 2
2
A
25 38Right-handed alpha
Helix 3
3
A
41 45Right-handed 310
Helix 4
4
A
55 65Right-handed alpha
Helix 5
5
A
75 80Right-handed alpha
Helix 6
6
A
93 107Right-handed alpha
Helix 7
7
A
111 113Right-handed 310
Helix 8
8
A
114 119Right-handed alpha
Helix 9
9
A
122 127Right-handed alpha
Helix 10
10
A
135 158Right-handed alpha
Helix 11
11
A
168 176Right-handed alpha
Helix 12
12
A
199 204Right-handed 310
Helix 13
13
A
210 214Right-handed alpha
Helix 14
14
B
3 12Right-handed alpha
Helix 15
15
B
25 38Right-handed alpha
Helix 16
16
B
41 45Right-handed 310
Helix 17
17
B
55 65Right-handed alpha
Helix 18
18
B
75 80Right-handed alpha
Helix 19
19
B
93 107Right-handed alpha
Helix 20
20
B
111 119Right-handed alpha
Helix 21
21
B
122 127Right-handed alpha
Helix 22
22
B
135 158Right-handed alpha
Helix 23
23
B
168 176Right-handed alpha
Helix 24
24
B
199 204Right-handed 310
Helix 25
25
B
210 214Right-handed alpha
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There are 2 sheets in PDB entry 1V5Z. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 164first strand
Strand 2
A
183 192anti-parallel
Strand 3
A
82 89anti-parallel
Strand 4
A
48 53anti-parallel
Strand 5
B
215 217parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 217first strand
Strand 2
B
48 53parallel
Strand 3
B
82 89anti-parallel
Strand 4
B
183 192anti-parallel
Strand 5
B
160 164anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il