Analysis of interatomic Contacts of Structural Units in PDB entry:
1V6N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V6N entry

There are 8 chains in PDB entry 1V6N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1THR 232
B
 ALA 1THR 232
C
 ALA 1THR 232
D
 ALA 1THR 232
E
 ALA 1THR 232
F
 ALA 1THR 232
G
 ALA 1THR 232
H
 ALA 1THR 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1V6N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
102 106Right-handed 310
Helix 2
2
A
127 131Right-handed 310
Helix 3
3
A
193 198Right-handed alpha
Helix 4
4
B
102 106Right-handed 310
Helix 5
5
B
127 131Right-handed 310
Helix 6
6
C
127 131Right-handed 310
Helix 7
7
C
193 198Right-handed alpha
Helix 8
8
D
102 106Right-handed 310
Helix 9
9
D
127 131Right-handed 310
Helix 10
10
E
102 106Right-handed 310
Helix 11
11
E
127 131Right-handed 310
Helix 12
12
E
193 198Right-handed alpha
Helix 13
13
F
102 106Right-handed 310
Helix 14
14
F
127 131Right-handed 310
Helix 15
15
F
193 197Right-handed 310
Helix 16
16
G
102 106Right-handed 310
Helix 17
17
G
127 131Right-handed 310
Helix 18
18
G
193 198Right-handed alpha
Helix 19
19
H
127 131Right-handed 310
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There are 19 sheets in PDB entry 1V6N. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
32 33anti-parallel
Strand 3
A
217 229anti-parallel
Strand 4
A
2 6anti-parallel
Strand 5
A
217 229anti-parallel
Strand 6
A
64 74anti-parallel
Strand 7
A
165 168anti-parallel
Strand 8
A
173 179anti-parallel
Strand 9
A
185 191anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 22first strand
Strand 2
A
43 48anti-parallel
Strand 3
A
201 209anti-parallel
Strand 4
A
52 53anti-parallel
Strand 5
A
201 209anti-parallel
Strand 6
A
84 91anti-parallel
Strand 7
A
114 121anti-parallel
Strand 8
A
137 144anti-parallel
Strand 9
A
149 152anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 8first strand
Strand 2
B
217 225anti-parallel
Strand 3
B
64 74anti-parallel
Strand 4
B
227 228anti-parallel
Strand 5
B
64 74anti-parallel
Strand 6
B
159 160anti-parallel
Strand 7
B
64 74anti-parallel
Strand 8
B
163 167anti-parallel
Strand 9
B
173 179anti-parallel
Strand 10
B
185 191anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 22first strand
Strand 2
B
43 48anti-parallel
Strand 3
B
201 209anti-parallel
Strand 4
B
52 53anti-parallel
Strand 5
B
201 209anti-parallel
Strand 6
B
84 91anti-parallel
Strand 7
B
114 123anti-parallel
Strand 8
B
137 144anti-parallel
Strand 9
B
150 152anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
32 33anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 26first strand
Strand 2
C
32 33anti-parallel
Strand 3
C
217 228anti-parallel
Strand 4
C
3 8anti-parallel
Strand 5
C
217 228anti-parallel
Strand 6
C
64 74anti-parallel
Strand 7
C
159 168anti-parallel
Strand 8
C
173 179anti-parallel
Strand 9
C
185 191anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 21first strand
Strand 2
C
43 48anti-parallel
Strand 3
C
201 209anti-parallel
Strand 4
C
52 53anti-parallel
Strand 5
C
201 209anti-parallel
Strand 6
C
84 91anti-parallel
Strand 7
C
114 123anti-parallel
Strand 8
C
137 144anti-parallel
Strand 9
C
149 152anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 8first strand
Strand 2
D
217 229anti-parallel
Strand 3
D
64 74anti-parallel
Strand 4
D
161 167anti-parallel
Strand 5
D
174 179anti-parallel
Strand 6
D
186 188anti-parallel
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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
18 22first strand
Strand 2
D
42 48anti-parallel
Strand 3
D
201 210anti-parallel
Strand 4
D
52 53anti-parallel
Strand 5
D
201 210anti-parallel
Strand 6
D
84 91anti-parallel
Strand 7
D
114 123anti-parallel
Strand 8
D
137 144anti-parallel
Strand 9
D
149 152anti-parallel
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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
25 26first strand
Strand 2
E
32 33anti-parallel
Strand 3
E
217 229anti-parallel
Strand 4
E
2 8anti-parallel
Strand 5
E
217 229anti-parallel
Strand 6
E
64 74anti-parallel
Strand 7
E
160 168anti-parallel
Strand 8
E
173 179anti-parallel
Strand 9
E
185 191anti-parallel
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There are 11 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
52 53first strand
Strand 2
E
201 206anti-parallel
Strand 3
E
84 91anti-parallel
Strand 4
E
208 210anti-parallel
Strand 5
E
42 48anti-parallel
Strand 6
E
18 22anti-parallel
Strand 7
E
42 48anti-parallel
Strand 8
E
201 206anti-parallel
Strand 9
E
84 91anti-parallel
Strand 10
E
114 123anti-parallel
Strand 11
E
139 144anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
55 56first strand
Strand 2
E
61 62anti-parallel
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There are 9 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
25 26first strand
Strand 2
F
32 33anti-parallel
Strand 3
F
217 228anti-parallel
Strand 4
F
4 8anti-parallel
Strand 5
F
217 228anti-parallel
Strand 6
F
64 74anti-parallel
Strand 7
F
159 168anti-parallel
Strand 8
F
173 179anti-parallel
Strand 9
F
185 191anti-parallel
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There are 9 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
18 22first strand
Strand 2
F
43 48anti-parallel
Strand 3
F
201 209anti-parallel
Strand 4
F
52 53anti-parallel
Strand 5
F
201 209anti-parallel
Strand 6
F
84 90anti-parallel
Strand 7
F
114 123anti-parallel
Strand 8
F
137 144anti-parallel
Strand 9
F
150 152anti-parallel
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There are 11 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
25 26first strand
Strand 2
G
32 33anti-parallel
Strand 3
G
217 229anti-parallel
Strand 4
G
2 3anti-parallel
Strand 5
G
217 229anti-parallel
Strand 6
G
6 8anti-parallel
Strand 7
G
217 229anti-parallel
Strand 8
G
64 74anti-parallel
Strand 9
G
159 168anti-parallel
Strand 10
G
173 179anti-parallel
Strand 11
G
185 188anti-parallel
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There are 9 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
18 22first strand
Strand 2
G
43 48anti-parallel
Strand 3
G
201 209anti-parallel
Strand 4
G
52 53anti-parallel
Strand 5
G
201 209anti-parallel
Strand 6
G
84 90anti-parallel
Strand 7
G
118 123anti-parallel
Strand 8
G
137 142anti-parallel
Strand 9
G
149 152anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
55 56first strand
Strand 2
G
61 62anti-parallel
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There are 9 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
25 26first strand
Strand 2
H
32 33anti-parallel
Strand 3
H
217 229anti-parallel
Strand 4
H
2 8anti-parallel
Strand 5
H
217 229anti-parallel
Strand 6
H
64 74anti-parallel
Strand 7
H
160 168anti-parallel
Strand 8
H
173 179anti-parallel
Strand 9
H
185 191anti-parallel
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There are 9 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
18 22first strand
Strand 2
H
42 48anti-parallel
Strand 3
H
201 210anti-parallel
Strand 4
H
52 53anti-parallel
Strand 5
H
201 210anti-parallel
Strand 6
H
84 91anti-parallel
Strand 7
H
118 123anti-parallel
Strand 8
H
137 142anti-parallel
Strand 9
H
149 152anti-parallel
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