Analysis of interatomic Contacts of Structural Units in PDB entry:
1V6Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V6Y entry

There is 1 chain in PDB entry 1V6Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3SER 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1V6Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 11Right-handed alpha
Helix 2
2
A
21 25Right-handed 310
Helix 3
3
A
27 38Right-handed alpha
Helix 4
4
A
48 53Right-handed alpha
Helix 5
5
A
61 74Right-handed alpha
Helix 6
6
A
90 96Right-handed alpha
Helix 7
7
A
97 117Right-handed alpha
Helix 8
8
A
143 148Right-handed 310
Helix 9
9
A
149 162Right-handed alpha
Helix 10
10
A
179 196Right-handed alpha
Helix 11
11
A
216 226Right-handed alpha
Helix 12
12
A
245 265Right-handed alpha
Helix 13
13
A
278 282Right-handed 310
Helix 14
14
A
283 288Right-handed alpha
Helix 15
15
A
304 316Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1V6Y.

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 209first strand
Strand 2
A
291 292first strand
Strand 3
A
201 204first strand
Strand 4
A
166 171parallel
Strand 5
A
122 127parallel
Strand 6
A
77 85parallel
Strand 7
A
40 43parallel
Strand 8
A
15 20parallel
Strand 9
A
269 274parallel
Strand 10
A
230 241parallel
Strand 11
A
291 292anti-parallel
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